Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04864-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:18552390-18558340 - Strand: +


Fig. S5 for SmLINC04864-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_001830.2 SmLINC04864-IBu 0.93 4.41e-07 3.01e-05
Smp_033000.1 SmLINC04864-IBu 0.91 1.92e-06 8.46e-05
Smp_051230.4 SmLINC04864-IBu 0.91 1.47e-06 7.01e-05
Smp_058360.2 SmLINC04864-IBu 0.90 2.54e-06 1.00e-04
Smp_145810.2 SmLINC04864-IBu 0.90 3.60e-06 1.00e-04
Smp_165180.1 SmLINC04864-IBu 0.91 1.87e-06 8.31e-05
Smp_168080.2 SmLINC04864-IBu 0.90 2.98e-06 1.00e-04
Smp_188900.1 SmLINC04864-IBu 0.94 1.16e-07 1.20e-05
Smp_195070.1 SmLINC04864-IBu 0.93 4.36e-07 2.99e-05