Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04710-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:13118760-13119640 - Strand: -


Fig. S5 for SmLINC04710-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04710-IBu 0 -0.76 -0.04 -2.76 4.43
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC04710-IBu 0.94 1.19e-07 1.21e-05
Smp_004420.3 SmLINC04710-IBu 0.96 3.65e-09 1.17e-06
Smp_041540.1 SmLINC04710-IBu 0.92 5.93e-07 3.70e-05
Smp_070540.1 SmLINC04710-IBu 0.91 1.73e-06 7.87e-05
Smp_105450.1 SmLINC04710-IBu 0.95 3.52e-08 5.33e-06
Smp_105450.2 SmLINC04710-IBu 0.95 2.28e-08 3.96e-06
Smp_126340.1 SmLINC04710-IBu 0.93 5.08e-07 3.32e-05
Smp_130100.1 SmLINC04710-IBu 0.90 3.00e-06 1.00e-04
Smp_130970.1 SmLINC04710-IBu 0.93 2.15e-07 1.83e-05
Smp_136730.1 SmLINC04710-IBu 0.93 3.85e-07 2.74e-05
Smp_137460.1 SmLINC04710-IBu 0.96 6.57e-09 1.72e-06
Smp_137700.1 SmLINC04710-IBu 0.97 4.47e-10 3.04e-07
Smp_137720.1 SmLINC04710-IBu 0.91 1.89e-06 8.37e-05
Smp_138360.1 SmLINC04710-IBu 0.98 1.30e-10 1.38e-07
Smp_139160.1 SmLINC04710-IBu 0.95 1.64e-08 3.17e-06
Smp_139240.1 SmLINC04710-IBu 0.91 2.50e-06 1.00e-04
Smp_144440.1 SmLINC04710-IBu 0.91 2.19e-06 9.28e-05
Smp_152150.1 SmLINC04710-IBu 0.93 3.60e-07 2.61e-05
Smp_162320.1 SmLINC04710-IBu 0.92 1.00e-06 5.35e-05
Smp_164400.1 SmLINC04710-IBu 0.95 3.21e-08 5.00e-06
Smp_181070.1 SmLINC04710-IBu 0.94 8.26e-08 9.50e-06
Smp_187140.1 SmLINC04710-IBu 0.91 2.26e-06 9.49e-05
Smp_194910.1 SmLINC04710-IBu 0.93 4.08e-07 2.85e-05
Smp_205580.1 SmLINC04710-IBu 0.91 1.23e-06 6.19e-05