Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04705-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:12436674-12438584 - Strand: +


Fig. S5 for SmLINC04705-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
SmLINC04705-IBu 0 -0.44 -1.73 -4.94 -10.68
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC04705-IBu 0.93 2.79e-07 2.19e-05
Smp_052280.2 SmLINC04705-IBu -0.90 2.60e-06 1.00e-04
Smp_055340.2 SmLINC04705-IBu -0.90 3.99e-06 1.00e-04
Smp_111640.1 SmLINC04705-IBu 0.90 2.92e-06 1.00e-04
Smp_160230.1 SmLINC04705-IBu 0.92 5.84e-07 3.66e-05