Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04693-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:11344528-11364651 - Strand: -


Fig. 6A for SmLINC04693-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_203400.1 0 1.56 0.55 -7.76 -4.64
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_206300.1 0 2.22 0.64 -3.00 -2.69
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_202840.1 0 4.66 1.62 -3.75 1.23
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_075430.1 0 1.59 -3.18 0.03 2.14
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038980.2 SmLINC04693-IBu 0.83 1.00e-04 1.40e-03
Smp_046690.1 SmLINC04693-IBu 0.89 8.34e-06 2.00e-04
Smp_048060.1 SmLINC04693-IBu 0.90 2.81e-06 1.00e-04
Smp_075430.1 SmLINC04693-IBu 0.89 5.62e-06 1.00e-04
Smp_123250.1 SmLINC04693-IBu 0.90 3.29e-06 1.00e-04
Smp_133830.1 SmLINC04693-IBu 0.81 1.00e-04 2.20e-03
Smp_140390.1 SmLINC04693-IBu 0.95 5.71e-08 6.98e-06
Smp_142120.1 SmLINC04693-IBu 0.90 3.54e-06 1.00e-04
Smp_152770.1 SmLINC04693-IBu 0.92 7.36e-07 4.13e-05
Smp_164170.1 SmLINC04693-IBu 0.82 1.00e-04 1.80e-03
Smp_164180.1 SmLINC04693-IBu 0.90 4.79e-06 1.00e-04
Smp_171540.2 SmLINC04693-IBu 0.83 1.00e-04 1.60e-03
Smp_172460.1 SmLINC04693-IBu 0.87 1.53e-05 3.00e-04
Smp_179670.1 SmLINC04693-IBu 0.80 2.00e-04 2.80e-03
Smp_187410.1 SmLINC04693-IBu 0.92 8.96e-07 4.74e-05
Smp_202030.1 SmLINC04693-IBu 0.87 1.70e-05 3.00e-04
Smp_202230.1 SmLINC04693-IBu 0.90 3.99e-06 1.00e-04
Smp_202780.1 SmLINC04693-IBu 0.83 1.00e-04 1.50e-03
Smp_202840.1 SmLINC04693-IBu 0.91 1.26e-06 6.05e-05
Smp_202990.1 SmLINC04693-IBu 0.88 9.80e-06 2.00e-04
Smp_203400.1 SmLINC04693-IBu 0.82 1.00e-04 1.70e-03
Smp_203550.1 SmLINC04693-IBu 0.88 1.25e-05 3.00e-04
Smp_203820.1 SmLINC04693-IBu 0.94 1.62e-07 1.43e-05
Smp_206300.1 SmLINC04693-IBu 0.89 6.89e-06 2.00e-04
Fig. S5 for SmLINC04693-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140390.1 SmLINC04693-IBu 0.95 5.71e-08 7.38e-06