Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04669-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:10554030-10558388 - Strand: -


Fig. S5 for SmLINC04669-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_011270.1 0 0.01 6.30 4.96 15.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC04669-IBu 0.93 2.35e-07 1.94e-05
Smp_000410.1 SmLINC04669-IBu 0.99 4.35e-14 9.78e-10
Smp_000420.1 SmLINC04669-IBu 0.98 8.39e-11 1.04e-07
Smp_011270.1 SmLINC04669-IBu 0.94 7.15e-08 8.60e-06
Smp_033250.1 SmLINC04669-IBu 0.99 1.64e-12 9.00e-09
Smp_058160.1 SmLINC04669-IBu 0.97 3.53e-10 2.61e-07
Smp_077920.1 SmLINC04669-IBu 0.99 5.10e-13 4.35e-09
Smp_131110.2 SmLINC04669-IBu 0.94 7.65e-08 9.01e-06
Smp_144440.1 SmLINC04669-IBu 0.96 2.88e-09 1.00e-06
Smp_155310.1 SmLINC04669-IBu 0.98 2.39e-12 1.13e-08
Smp_155310.2 SmLINC04669-IBu 0.98 2.54e-12 1.17e-08
Smp_175560.1 SmLINC04669-IBu 0.97 1.98e-10 1.80e-07
Smp_191910.1 SmLINC04669-IBu 0.98 2.29e-12 1.10e-08