Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04622-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:9873857-9876519 - Strand: -


Fig. S5 for SmLINC04622-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC04622-IBu 0 0.14 -2.26 -3.25 -4.61

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC04622-IBu 0.94 1.49e-07 1.42e-05
Smp_111640.1 SmLINC04622-IBu 0.95 2.98e-08 4.75e-06
Smp_112090.1 SmLINC04622-IBu 0.92 8.51e-07 4.76e-05
Smp_125070.1 SmLINC04622-IBu 0.94 1.89e-07 1.68e-05
Smp_184710.1 SmLINC04622-IBu 0.92 5.79e-07 3.64e-05