Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04616-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:9604123-9617432 - Strand: -


Fig. S5 for SmLINC04616-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04616-IBu 0 2.89 0.45 5.24 2.05
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_154180.1 0 5.56 0.00 15.37 13.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC04616-IBu 0.92 1.05e-06 5.52e-05
Smp_105730.1 SmLINC04616-IBu 0.91 1.40e-06 6.76e-05
Smp_125200.1 SmLINC04616-IBu 0.90 4.74e-06 1.00e-04
Smp_131840.1 SmLINC04616-IBu 0.92 5.75e-07 3.62e-05
Smp_154180.1 SmLINC04616-IBu 0.93 2.71e-07 2.15e-05
Smp_154190.1 SmLINC04616-IBu 0.93 3.72e-07 2.67e-05
Smp_160360.1 SmLINC04616-IBu 0.94 1.31e-07 1.30e-05
Smp_164550.1 SmLINC04616-IBu 0.91 1.82e-06 8.14e-05
Smp_172520.1 SmLINC04616-IBu 0.90 3.22e-06 1.00e-04
Smp_197400.1 SmLINC04616-IBu 0.94 1.66e-07 1.53e-05