Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04608-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:9241207-9244609 - Strand: -


Fig. S5 for SmLINC04608-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04608-IBu 0 5.68 4.78 8.95 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC04608-IBu 0.90 3.74e-06 1.00e-04
Smp_037720.1 SmLINC04608-IBu 0.92 5.83e-07 3.66e-05
Smp_056460.1 SmLINC04608-IBu 0.92 9.56e-07 5.17e-05
Smp_083430.1 SmLINC04608-IBu 0.93 2.52e-07 2.04e-05
Smp_131410.1 SmLINC04608-IBu 0.90 4.47e-06 1.00e-04
Smp_137810.1 SmLINC04608-IBu 0.95 2.05e-08 3.70e-06
Smp_140720.1 SmLINC04608-IBu 0.91 2.20e-06 9.31e-05
Smp_155570.1 SmLINC04608-IBu 0.93 2.77e-07 2.18e-05
Smp_192780.1 SmLINC04608-IBu 0.90 4.05e-06 1.00e-04
Smp_196830.1 SmLINC04608-IBu 0.94 1.26e-07 1.27e-05
Smp_202610.1 SmLINC04608-IBu 0.91 1.99e-06 8.68e-05