Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04578-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:8121897-8128862 - Strand: -


Fig. S5 for SmLINC04578-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
SmLINC04578-IBu 0 5.46 2.25 7.37 10.84
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC04578-IBu 0.95 2.65e-08 4.39e-06
Smp_007950.1 SmLINC04578-IBu 0.95 1.66e-08 3.20e-06
Smp_016490.2 SmLINC04578-IBu 0.94 9.54e-08 1.04e-05
Smp_028870.1 SmLINC04578-IBu 0.93 3.42e-07 2.52e-05
Smp_037720.1 SmLINC04578-IBu 0.95 4.18e-08 5.98e-06
Smp_041540.1 SmLINC04578-IBu 0.97 2.98e-10 2.35e-07
Smp_070540.1 SmLINC04578-IBu 0.98 1.03e-11 2.80e-08
Smp_083430.1 SmLINC04578-IBu 0.90 2.98e-06 1.00e-04
Smp_085180.1 SmLINC04578-IBu 0.94 1.25e-07 1.26e-05
Smp_086450.3 SmLINC04578-IBu 0.92 9.84e-07 5.27e-05
Smp_102780.1 SmLINC04578-IBu 0.94 8.99e-08 1.00e-05
Smp_105450.1 SmLINC04578-IBu 0.99 7.61e-13 5.60e-09
Smp_105450.2 SmLINC04578-IBu 0.99 2.72e-13 2.98e-09
Smp_123880.1 SmLINC04578-IBu 0.95 3.53e-08 5.34e-06
Smp_126340.1 SmLINC04578-IBu 0.98 6.83e-12 2.17e-08
Smp_130100.1 SmLINC04578-IBu 0.95 4.86e-08 6.62e-06
Smp_131410.1 SmLINC04578-IBu 0.95 2.24e-08 3.92e-06
Smp_131490.1 SmLINC04578-IBu 0.90 3.21e-06 1.00e-04
Smp_136730.1 SmLINC04578-IBu 0.99 4.45e-13 4.00e-09
Smp_137460.1 SmLINC04578-IBu 0.94 6.57e-08 8.12e-06
Smp_137700.1 SmLINC04578-IBu 0.96 4.09e-09 1.26e-06
Smp_137720.1 SmLINC04578-IBu 0.95 3.27e-08 5.07e-06
Smp_137810.1 SmLINC04578-IBu 0.91 2.02e-06 8.76e-05
Smp_138360.1 SmLINC04578-IBu 0.95 5.50e-08 7.20e-06
Smp_139160.1 SmLINC04578-IBu 0.98 1.56e-10 1.55e-07
Smp_139240.1 SmLINC04578-IBu 0.97 3.81e-10 2.74e-07
Smp_140720.1 SmLINC04578-IBu 0.92 5.32e-07 3.43e-05
Smp_152150.1 SmLINC04578-IBu 0.92 6.40e-07 3.90e-05
Smp_159650.1 SmLINC04578-IBu 0.92 7.46e-07 4.34e-05
Smp_162320.1 SmLINC04578-IBu 0.96 7.20e-09 1.83e-06
Smp_163700.1 SmLINC04578-IBu 0.95 5.11e-08 6.85e-06
Smp_164320.1 SmLINC04578-IBu 0.94 7.95e-08 9.25e-06
Smp_164400.1 SmLINC04578-IBu 0.95 1.80e-08 3.39e-06
Smp_181070.1 SmLINC04578-IBu 0.98 5.39e-11 7.90e-08
Smp_187140.1 SmLINC04578-IBu 0.97 5.96e-10 3.65e-07
Smp_194380.1 SmLINC04578-IBu 0.96 8.30e-09 2.01e-06
Smp_194910.1 SmLINC04578-IBu 0.98 8.71e-11 1.06e-07
Smp_196830.1 SmLINC04578-IBu 0.93 2.57e-07 2.07e-05
Smp_202610.1 SmLINC04578-IBu 0.91 1.82e-06 8.14e-05
Smp_203030.1 SmLINC04578-IBu 0.93 3.22e-07 2.42e-05
Smp_205580.1 SmLINC04578-IBu 0.97 8.96e-10 4.75e-07