Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04565-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:7591537-7600402 - Strand: +


Fig. S5 for SmLINC04565-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04565-IBu 0 5.24 3.40 8.77 10.10
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC04565-IBu 0.94 7.16e-08 8.61e-06
Smp_016490.2 SmLINC04565-IBu 0.91 1.98e-06 8.65e-05
Smp_028870.1 SmLINC04565-IBu 0.91 1.51e-06 7.13e-05
Smp_037720.1 SmLINC04565-IBu 0.94 1.03e-07 1.11e-05
Smp_056460.1 SmLINC04565-IBu 0.91 2.37e-06 9.80e-05
Smp_083430.1 SmLINC04565-IBu 0.97 6.95e-10 4.03e-07
Smp_085180.1 SmLINC04565-IBu 0.91 1.46e-06 6.98e-05
Smp_102780.1 SmLINC04565-IBu 0.92 9.74e-07 5.23e-05
Smp_123880.1 SmLINC04565-IBu 0.94 1.22e-07 1.24e-05
Smp_131410.1 SmLINC04565-IBu 0.94 1.04e-07 1.11e-05
Smp_131490.1 SmLINC04565-IBu 0.90 4.34e-06 1.00e-04
Smp_137810.1 SmLINC04565-IBu 0.96 6.89e-09 1.78e-06
Smp_139240.1 SmLINC04565-IBu 0.92 1.07e-06 5.62e-05
Smp_140720.1 SmLINC04565-IBu 0.91 1.78e-06 8.02e-05
Smp_155570.1 SmLINC04565-IBu 0.95 2.61e-08 4.35e-06
Smp_162320.1 SmLINC04565-IBu 0.90 4.49e-06 1.00e-04
Smp_163700.1 SmLINC04565-IBu 0.94 1.78e-07 1.60e-05
Smp_164320.1 SmLINC04565-IBu 0.93 3.11e-07 2.36e-05
Smp_187140.1 SmLINC04565-IBu 0.91 1.20e-06 6.07e-05
Smp_194380.1 SmLINC04565-IBu 0.94 1.30e-07 1.29e-05
Smp_196830.1 SmLINC04565-IBu 0.97 2.01e-09 8.00e-07
Smp_202610.1 SmLINC04565-IBu 0.94 9.27e-08 1.02e-05
Smp_203030.1 SmLINC04565-IBu 0.90 3.01e-06 1.00e-04
Smp_205580.1 SmLINC04565-IBu 0.90 3.47e-06 1.00e-04