Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04562-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:7587649-7591630 - Strand: -


Fig. S5 for SmLINC04562-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
SmLINC04562-IBu 0 3.14 6.47 9.36 8.80
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC04562-IBu 0.94 1.17e-07 1.20e-05
Smp_014780.1 SmLINC04562-IBu 0.96 5.20e-09 1.48e-06
Smp_017610.1 SmLINC04562-IBu 0.90 3.78e-06 1.00e-04
Smp_020760.2 SmLINC04562-IBu 0.91 2.36e-06 9.79e-05
Smp_031040.1 SmLINC04562-IBu 0.91 1.84e-06 8.22e-05
Smp_034980.2 SmLINC04562-IBu 0.91 1.74e-06 7.90e-05
Smp_045200.1 SmLINC04562-IBu 0.98 6.78e-12 2.16e-08
Smp_051210.3 SmLINC04562-IBu 0.93 2.02e-07 1.75e-05
Smp_055340.2 SmLINC04562-IBu 0.90 3.06e-06 1.00e-04
Smp_058140.3 SmLINC04562-IBu 0.93 4.35e-07 2.98e-05
Smp_058660.1 SmLINC04562-IBu 0.94 1.86e-07 1.66e-05
Smp_068270.1 SmLINC04562-IBu 0.94 1.29e-07 1.28e-05
Smp_081920.1 SmLINC04562-IBu 0.94 1.91e-07 1.68e-05
Smp_082580.1 SmLINC04562-IBu 0.97 1.47e-09 6.54e-07
Smp_084270.1 SmLINC04562-IBu 0.94 1.06e-07 1.12e-05
Smp_105730.1 SmLINC04562-IBu 0.94 1.44e-07 1.39e-05
Smp_118560.1 SmLINC04562-IBu 0.97 1.73e-09 7.24e-07
Smp_123200.1 SmLINC04562-IBu 0.92 5.92e-07 3.69e-05
Smp_125200.1 SmLINC04562-IBu 0.94 6.16e-08 7.78e-06
Smp_125210.1 SmLINC04562-IBu 0.96 1.17e-08 2.54e-06
Smp_131840.1 SmLINC04562-IBu 0.95 3.36e-08 5.16e-06
Smp_134960.1 SmLINC04562-IBu 0.96 1.22e-08 2.60e-06
Smp_137320.1 SmLINC04562-IBu 0.94 6.54e-08 8.10e-06
Smp_141680.1 SmLINC04562-IBu 0.97 2.46e-10 2.07e-07
Smp_145400.1 SmLINC04562-IBu 0.95 3.72e-08 5.53e-06
Smp_150980.2 SmLINC04562-IBu 0.96 1.35e-08 2.79e-06
Smp_151120.1 SmLINC04562-IBu 0.94 8.14e-08 9.40e-06
Smp_154180.1 SmLINC04562-IBu 0.95 5.59e-08 7.29e-06
Smp_154190.1 SmLINC04562-IBu 0.95 3.10e-08 4.88e-06
Smp_160360.1 SmLINC04562-IBu 0.92 6.14e-07 3.79e-05
Smp_163940.1 SmLINC04562-IBu 0.93 3.51e-07 2.57e-05
Smp_164550.1 SmLINC04562-IBu 0.96 1.14e-08 2.49e-06
Smp_170280.1 SmLINC04562-IBu 0.96 2.85e-09 1.00e-06
Smp_172480.1 SmLINC04562-IBu 0.96 6.55e-09 1.72e-06
Smp_172520.1 SmLINC04562-IBu 0.94 8.52e-08 9.70e-06
Smp_172960.1 SmLINC04562-IBu 0.91 2.28e-06 9.56e-05
Smp_175020.1 SmLINC04562-IBu 0.93 2.40e-07 1.97e-05
Smp_194960.1 SmLINC04562-IBu 0.96 6.42e-09 1.70e-06
Smp_194970.1 SmLINC04562-IBu 0.95 2.01e-08 3.65e-06
Smp_194980.1 SmLINC04562-IBu 0.94 8.56e-08 9.73e-06
Smp_197400.1 SmLINC04562-IBu 0.93 2.86e-07 2.23e-05
Smp_200750.1 SmLINC04562-IBu 0.94 7.09e-08 8.56e-06
Smp_203090.1 SmLINC04562-IBu 0.90 3.01e-06 1.00e-04
Smp_205270.1 SmLINC04562-IBu 0.96 2.45e-09 9.08e-07