Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04557-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:6691811-6693542 - Strand: -


Fig. S5 for SmLINC04557-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04557-IBu 0 2.23 0.88 6.46 6.23
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_020760.2 0 9.23 8.40 12.26 12.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC04557-IBu 0.91 2.26e-06 9.50e-05
Smp_031770.10 SmLINC04557-IBu 0.91 1.93e-06 8.48e-05
Smp_058660.1 SmLINC04557-IBu 0.92 7.21e-07 4.24e-05
Smp_125210.1 SmLINC04557-IBu 0.90 3.17e-06 1.00e-04
Smp_137320.1 SmLINC04557-IBu 0.92 8.45e-07 4.74e-05
Smp_170280.1 SmLINC04557-IBu 0.92 8.79e-07 4.87e-05
Smp_200750.1 SmLINC04557-IBu 0.91 1.47e-06 7.02e-05