Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04539-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:6052458-6053404 - Strand: -


Fig. S5 for SmLINC04539-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_128510.1 0 3.20 1.49 10.55 5.33
SmLINC04539-IBu 0 0.00 2.19 7.69 6.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC04539-IBu 0.99 3.01e-13 3.15e-09
Smp_014780.1 SmLINC04539-IBu 0.96 7.62e-09 1.90e-06
Smp_017610.1 SmLINC04539-IBu 0.94 7.70e-08 9.05e-06
Smp_045200.1 SmLINC04539-IBu 0.97 1.33e-09 6.12e-07
Smp_058140.3 SmLINC04539-IBu 0.95 2.22e-08 3.90e-06
Smp_058660.1 SmLINC04539-IBu 0.91 1.96e-06 8.60e-05
Smp_068270.1 SmLINC04539-IBu 0.93 2.03e-07 1.76e-05
Smp_081920.1 SmLINC04539-IBu 0.98 7.50e-11 9.73e-08
Smp_082580.1 SmLINC04539-IBu 0.99 1.17e-12 7.30e-09
Smp_084270.1 SmLINC04539-IBu 0.96 2.91e-09 1.01e-06
Smp_105730.1 SmLINC04539-IBu 0.99 1.26e-12 7.61e-09
Smp_118560.1 SmLINC04539-IBu 0.97 5.33e-10 3.40e-07
Smp_123200.1 SmLINC04539-IBu 0.97 1.18e-09 5.67e-07
Smp_123550.1 SmLINC04539-IBu 0.90 4.67e-06 1.00e-04
Smp_125200.1 SmLINC04539-IBu 0.91 2.39e-06 9.87e-05
Smp_125210.1 SmLINC04539-IBu 0.96 5.17e-09 1.47e-06
Smp_128510.1 SmLINC04539-IBu 0.94 1.41e-07 1.36e-05
Smp_131840.1 SmLINC04539-IBu 0.99 1.60e-13 2.15e-09
Smp_134960.1 SmLINC04539-IBu 0.98 6.23e-11 8.65e-08
Smp_137320.1 SmLINC04539-IBu 0.93 2.79e-07 2.19e-05
Smp_141680.1 SmLINC04539-IBu 0.96 6.11e-09 1.64e-06
Smp_150980.2 SmLINC04539-IBu 0.94 1.35e-07 1.33e-05
Smp_151120.1 SmLINC04539-IBu 0.92 5.94e-07 3.70e-05
Smp_154180.1 SmLINC04539-IBu 0.98 3.28e-12 1.37e-08
Smp_154190.1 SmLINC04539-IBu 0.97 2.24e-09 8.58e-07
Smp_160360.1 SmLINC04539-IBu 0.95 3.33e-08 5.12e-06
Smp_163940.1 SmLINC04539-IBu 0.95 5.03e-08 6.78e-06
Smp_164550.1 SmLINC04539-IBu 0.96 1.44e-08 2.91e-06
Smp_170280.1 SmLINC04539-IBu 0.95 2.91e-08 4.68e-06
Smp_172480.1 SmLINC04539-IBu 0.94 1.45e-07 1.39e-05
Smp_172520.1 SmLINC04539-IBu 0.99 2.97e-13 3.13e-09
Smp_175020.1 SmLINC04539-IBu 0.95 2.27e-08 3.95e-06
Smp_194960.1 SmLINC04539-IBu 0.99 3.01e-13 3.15e-09
Smp_194970.1 SmLINC04539-IBu 0.99 2.49e-13 2.82e-09
Smp_194980.1 SmLINC04539-IBu 0.98 2.15e-11 4.43e-08
Smp_197400.1 SmLINC04539-IBu 0.97 2.34e-10 2.01e-07
Smp_200750.1 SmLINC04539-IBu 0.95 3.59e-08 5.39e-06
Smp_205270.1 SmLINC04539-IBu 0.95 2.94e-08 4.71e-06