Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04481-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:4147526-4149524 - Strand: +


Fig. 6A for SmLINC04481-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_078910.1 0 0.98 1.80 3.77 -0.83
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
Smp_151620.1 0 1.79 3.08 5.28 3.22
Smp_045220.2 0 0.93 0.81 4.20 3.26
Smp_132980.1 0 1.40 1.57 4.61 3.32
Smp_129200.1 0 2.53 1.15 4.98 3.48
Smp_194950.1 0 5.18 2.81 7.66 3.82
Smp_072100.1 0 2.65 -2.16 5.21 3.94
Smp_047240.2 0 3.37 3.80 6.07 4.36
Smp_134710.1 0 4.16 2.63 6.53 4.53
Smp_133070.1 0 2.47 2.61 5.66 4.63
Smp_205920.1 0 2.95 2.42 4.90 4.77
Smp_058670.1 0 2.95 3.28 5.54 4.95
Smp_000900.1 0 3.50 3.43 6.11 5.02
Smp_200730.1 0 6.42 5.68 8.10 5.64
Smp_137980.1 0 4.49 5.09 6.98 5.86
Smp_161650.1 0 4.64 4.26 7.15 5.86
Smp_181440.1 0 6.14 0.00 7.84 7.34
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_149990.2 0 8.45 0.00 9.97 8.86
Smp_071380.3 0 11.07 11.55 12.98 12.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000900.1 SmLINC04481-IBu 0.83 1.00e-04 1.50e-03
Smp_045220.2 SmLINC04481-IBu 0.84 8.14e-05 1.20e-03
Smp_047240.2 SmLINC04481-IBu 0.87 2.03e-05 4.00e-04
Smp_058670.1 SmLINC04481-IBu 0.80 2.00e-04 2.90e-03
Smp_071380.3 SmLINC04481-IBu 0.87 1.61e-05 3.00e-04
Smp_072100.1 SmLINC04481-IBu 0.89 8.80e-06 2.00e-04
Smp_078910.1 SmLINC04481-IBu 0.84 6.62e-05 1.00e-03
Smp_129200.1 SmLINC04481-IBu 0.88 1.51e-05 3.00e-04
Smp_132980.1 SmLINC04481-IBu 0.81 2.00e-04 2.60e-03
Smp_133070.1 SmLINC04481-IBu 0.82 1.00e-04 2.10e-03
Smp_134710.1 SmLINC04481-IBu 0.80 3.00e-04 3.30e-03
Smp_137980.1 SmLINC04481-IBu 0.85 5.11e-05 8.00e-04
Smp_141480.1 SmLINC04481-IBu 0.88 1.40e-05 3.00e-04
Smp_149990.2 SmLINC04481-IBu 0.85 4.29e-05 7.00e-04
Smp_151620.1 SmLINC04481-IBu 0.80 3.00e-04 3.40e-03
Smp_161650.1 SmLINC04481-IBu 0.80 3.00e-04 3.10e-03
Smp_181440.1 SmLINC04481-IBu 0.89 5.49e-06 1.00e-04
Smp_194950.1 SmLINC04481-IBu 0.87 1.68e-05 3.00e-04
Smp_200730.1 SmLINC04481-IBu 0.86 2.80e-05 5.00e-04
Smp_205920.1 SmLINC04481-IBu 0.83 1.00e-04 1.40e-03