Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04469-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:4007564-4034065 - Strand: -


Fig. S5 for SmLINC04469-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04469-IBu 0 1.06 2.75 4.67 4.07
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC04469-IBu 0.91 1.23e-06 6.18e-05
Smp_045200.1 SmLINC04469-IBu 0.92 8.61e-07 4.80e-05
Smp_118560.1 SmLINC04469-IBu 0.91 1.99e-06 8.68e-05
Smp_125200.1 SmLINC04469-IBu 0.94 1.00e-07 1.08e-05
Smp_150980.2 SmLINC04469-IBu 0.92 8.18e-07 4.63e-05
Smp_154190.1 SmLINC04469-IBu 0.91 1.46e-06 6.97e-05
Smp_164550.1 SmLINC04469-IBu 0.91 1.43e-06 6.89e-05