Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04450-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:799001-801859 - Strand: +


Fig. S5 for SmLINC04450-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC04450-IBu 0 -0.63 -2.31 -4.52 -5.41
Smp_055340.2 0 8.73 10.47 12.13 12.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC04450-IBu 0.93 2.67e-07 2.13e-05
Smp_036270.4 SmLINC04450-IBu 0.97 8.33e-10 4.53e-07
Smp_051230.4 SmLINC04450-IBu 0.91 1.50e-06 7.10e-05
Smp_055340.2 SmLINC04450-IBu -0.90 3.03e-06 1.00e-04
Smp_111640.1 SmLINC04450-IBu 0.90 3.85e-06 1.00e-04
Smp_125070.1 SmLINC04450-IBu 0.90 4.82e-06 1.00e-04
Smp_160230.1 SmLINC04450-IBu 0.92 5.97e-07 3.72e-05
Smp_168080.2 SmLINC04450-IBu 0.94 1.44e-07 1.39e-05
Smp_188900.1 SmLINC04450-IBu 0.90 3.14e-06 1.00e-04
Smp_195070.1 SmLINC04450-IBu 0.94 1.08e-07 1.14e-05