Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04443-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:30609-36606 - Strand: +


Fig. S5 for SmLINC04443-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
SmLINC04443-IBu 0 0.55 -0.36 -3.67 -9.70
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 SmLINC04443-IBu 0.94 1.54e-07 1.45e-05
Smp_109340.1 SmLINC04443-IBu 0.95 5.87e-08 7.53e-06
Smp_184710.1 SmLINC04443-IBu 0.93 1.95e-07 1.71e-05
Smp_185170.1 SmLINC04443-IBu 0.91 1.98e-06 8.66e-05