Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04441-IBu Data

Chromosome: Chr 7.unplaced.SC 0100 - Coordinate: Chr 7.unplaced.SC 0100:858685-859960 - Strand: +


Fig. S5 for SmLINC04441-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC04441-IBu 0 0.43 -0.99 -4.09 -5.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048260.1 SmLINC04441-IBu 0.92 1.14e-06 5.87e-05
Smp_109340.1 SmLINC04441-IBu 0.90 3.69e-06 1.00e-04
Smp_184710.1 SmLINC04441-IBu 0.92 6.03e-07 3.74e-05