Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04439-IBu Data

Chromosome: Chr 7.unplaced.SC 0100 - Coordinate: Chr 7.unplaced.SC 0100:637169-643152 - Strand: +


Fig. S5 for SmLINC04439-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC04439-IBu 0 -0.04 -2.12 -5.68 -6.38
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC04439-IBu 0.95 4.59e-08 6.37e-06
Smp_035200.3 SmLINC04439-IBu 0.94 1.38e-07 1.35e-05
Smp_036270.4 SmLINC04439-IBu 0.98 2.79e-12 1.24e-08
Smp_111640.1 SmLINC04439-IBu 0.98 1.22e-10 1.32e-07
Smp_112090.1 SmLINC04439-IBu 0.95 4.43e-08 6.22e-06
Smp_125070.1 SmLINC04439-IBu 0.93 4.05e-07 2.83e-05
Smp_182090.1 SmLINC04439-IBu 0.92 1.14e-06 5.85e-05
Smp_184710.1 SmLINC04439-IBu 0.94 6.89e-08 8.39e-06
Smp_204360.1 SmLINC04439-IBu 0.92 9.07e-07 4.98e-05
Smp_205450.1 SmLINC04439-IBu 0.92 7.42e-07 4.33e-05