Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04404-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:7903003-7903815 - Strand: +


Fig. S5 for SmLINC04404-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC04404-IBu 0 0.00 0.00 8.28 8.99
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC04404-IBu -0.91 1.63e-06 7.53e-05
Smp_024180.1 SmLINC04404-IBu 0.91 2.00e-06 8.71e-05
Smp_024180.2 SmLINC04404-IBu 0.94 1.72e-07 1.57e-05
Smp_031040.1 SmLINC04404-IBu 0.93 4.37e-07 2.99e-05
Smp_033260.1 SmLINC04404-IBu 0.97 6.22e-10 3.75e-07
Smp_038870.2 SmLINC04404-IBu 0.97 1.83e-09 7.50e-07
Smp_040970.2 SmLINC04404-IBu 0.97 5.67e-10 3.54e-07
Smp_050350.3 SmLINC04404-IBu 0.97 1.27e-09 5.94e-07
Smp_052280.2 SmLINC04404-IBu 0.96 5.61e-09 1.55e-06
Smp_055340.2 SmLINC04404-IBu 0.91 2.33e-06 9.69e-05
Smp_056460.1 SmLINC04404-IBu 0.98 1.92e-11 4.12e-08
Smp_079420.1 SmLINC04404-IBu 0.98 5.50e-11 7.99e-08
Smp_090140.1 SmLINC04404-IBu 0.91 1.82e-06 8.14e-05
Smp_094050.1 SmLINC04404-IBu 0.97 1.30e-09 6.03e-07
Smp_095410.1 SmLINC04404-IBu 0.96 4.73e-09 1.39e-06
Smp_137000.2 SmLINC04404-IBu 0.96 1.18e-08 2.55e-06
Smp_145400.1 SmLINC04404-IBu 0.93 2.60e-07 2.09e-05
Smp_156930.1 SmLINC04404-IBu 0.91 1.55e-06 7.27e-05
Smp_159070.2 SmLINC04404-IBu 0.91 1.55e-06 7.28e-05
Smp_169670.1 SmLINC04404-IBu 0.92 1.01e-06 5.38e-05
Smp_172480.1 SmLINC04404-IBu 0.92 8.82e-07 4.88e-05
Smp_172960.1 SmLINC04404-IBu 0.94 7.04e-08 8.52e-06
Smp_192780.1 SmLINC04404-IBu 0.95 2.46e-08 4.17e-06
Smp_194860.1 SmLINC04404-IBu 0.96 3.42e-09 1.12e-06
Smp_203090.1 SmLINC04404-IBu 0.94 1.62e-07 1.51e-05
Smp_205270.1 SmLINC04404-IBu 0.90 2.76e-06 1.00e-04
Smp_212510.1 SmLINC04404-IBu -0.90 3.17e-06 1.00e-04