Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04400-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:7713441-7738175 - Strand: -


Fig. S5 for SmLINC04400-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_128510.1 0 3.20 1.49 10.55 5.33
SmLINC04400-IBu 0 1.83 0.37 7.54 5.96
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_045200.1 SmLINC04400-IBu 0.90 4.35e-06 1.00e-04
Smp_082580.1 SmLINC04400-IBu 0.91 2.18e-06 9.24e-05
Smp_084270.1 SmLINC04400-IBu 0.93 4.23e-07 2.92e-05
Smp_105730.1 SmLINC04400-IBu 0.91 2.22e-06 9.38e-05
Smp_118560.1 SmLINC04400-IBu 0.91 1.47e-06 7.00e-05
Smp_123200.1 SmLINC04400-IBu 0.96 2.35e-09 8.84e-07
Smp_125210.1 SmLINC04400-IBu 0.91 2.09e-06 8.98e-05
Smp_128510.1 SmLINC04400-IBu 0.91 1.54e-06 7.24e-05
Smp_134960.1 SmLINC04400-IBu 0.93 2.53e-07 2.04e-05
Smp_137320.1 SmLINC04400-IBu 0.92 8.05e-07 4.58e-05
Smp_141680.1 SmLINC04400-IBu 0.90 3.46e-06 1.00e-04
Smp_163940.1 SmLINC04400-IBu 0.95 5.85e-08 7.51e-06
Smp_170280.1 SmLINC04400-IBu 0.91 2.22e-06 9.38e-05
Smp_175020.1 SmLINC04400-IBu 0.92 7.21e-07 4.24e-05
Smp_194960.1 SmLINC04400-IBu 0.91 1.39e-06 6.75e-05
Smp_194970.1 SmLINC04400-IBu 0.92 5.38e-07 3.45e-05
Smp_194980.1 SmLINC04400-IBu 0.93 3.65e-07 2.64e-05
Smp_200750.1 SmLINC04400-IBu 0.94 1.34e-07 1.32e-05