Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04394-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:6624533-6625546 - Strand: +


Fig. S5 for SmLINC04394-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04394-IBu 0 3.73 2.19 6.11 6.20
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC04394-IBu 0.91 1.23e-06 6.19e-05
Smp_031040.1 SmLINC04394-IBu 0.91 1.75e-06 7.93e-05
Smp_058660.1 SmLINC04394-IBu 0.93 2.94e-07 2.27e-05
Smp_083990.2 SmLINC04394-IBu 0.93 2.42e-07 1.99e-05
Smp_137000.2 SmLINC04394-IBu 0.91 1.31e-06 6.48e-05
Smp_137320.1 SmLINC04394-IBu 0.90 2.72e-06 1.00e-04
Smp_141680.1 SmLINC04394-IBu 0.90 2.67e-06 1.00e-04
Smp_145400.1 SmLINC04394-IBu 0.92 8.52e-07 4.76e-05
Smp_151120.1 SmLINC04394-IBu 0.94 1.89e-07 1.67e-05
Smp_172480.1 SmLINC04394-IBu 0.91 2.31e-06 9.63e-05
Smp_172960.1 SmLINC04394-IBu 0.93 2.76e-07 2.17e-05
Smp_194860.1 SmLINC04394-IBu 0.90 2.59e-06 1.00e-04
Smp_203090.1 SmLINC04394-IBu 0.90 3.22e-06 1.00e-04
Smp_205270.1 SmLINC04394-IBu 0.90 2.63e-06 1.00e-04