Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04387-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:6590461-6591982 - Strand: -


Fig. 6A for SmLINC04387-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_032580.1 0 -0.52 -0.98 -8.52 -6.88
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
SmLINC04387-IBu 0 -2.15 -6.76 0.33 0.40
Smp_136860.1 0 -0.98 -3.85 1.87 1.70
Smp_138730.1 0 3.13 0.56 4.92 4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032580.1 SmLINC04387-IBu -0.8 2.00e-04 3.00e-03
Smp_086600.1 SmLINC04387-IBu -0.8 2.00e-04 2.80e-03
Smp_136860.1 SmLINC04387-IBu 0.8 2.00e-04 3.00e-03
Smp_138730.1 SmLINC04387-IBu 0.8 2.00e-04 3.10e-03
Smp_201240.1 SmLINC04387-IBu -0.8 2.00e-04 2.80e-03