Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04385-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:6377124-6381555 - Strand: -


Fig. S5 for SmLINC04385-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
SmLINC04385-IBu 0 -0.57 -4.82 -5.77 -7.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC04385-IBu 0.93 4.43e-07 3.02e-05
Smp_051230.4 SmLINC04385-IBu 0.91 2.10e-06 9.02e-05
Smp_112090.1 SmLINC04385-IBu 0.91 1.54e-06 7.24e-05