Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04339-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:4562710-4578086 - Strand: -


Fig. S5 for SmLINC04339-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04339-IBu 0 1.14 -1.15 2.09 4.75
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC04339-IBu 0.93 3.85e-07 2.74e-05
Smp_007950.1 SmLINC04339-IBu 0.96 7.61e-09 1.90e-06
Smp_016490.2 SmLINC04339-IBu 0.94 8.44e-08 9.64e-06
Smp_028870.1 SmLINC04339-IBu 0.93 2.93e-07 2.27e-05
Smp_037720.1 SmLINC04339-IBu 0.96 8.55e-09 2.05e-06
Smp_041540.1 SmLINC04339-IBu 0.96 4.18e-09 1.28e-06
Smp_070540.1 SmLINC04339-IBu 0.98 1.60e-10 1.57e-07
Smp_083430.1 SmLINC04339-IBu 0.92 9.83e-07 5.27e-05
Smp_085180.1 SmLINC04339-IBu 0.94 1.39e-07 1.35e-05
Smp_086450.3 SmLINC04339-IBu 0.90 2.51e-06 1.00e-04
Smp_102780.1 SmLINC04339-IBu 0.94 7.30e-08 8.73e-06
Smp_105450.1 SmLINC04339-IBu 0.97 1.19e-09 5.69e-07
Smp_105450.2 SmLINC04339-IBu 0.97 1.76e-10 1.67e-07
Smp_123880.1 SmLINC04339-IBu 0.95 2.11e-08 3.76e-06
Smp_126340.1 SmLINC04339-IBu 0.97 1.01e-09 5.13e-07
Smp_130100.1 SmLINC04339-IBu 0.95 5.83e-08 7.50e-06
Smp_131410.1 SmLINC04339-IBu 0.96 1.16e-08 2.53e-06
Smp_131490.1 SmLINC04339-IBu 0.90 3.09e-06 1.00e-04
Smp_136730.1 SmLINC04339-IBu 0.98 2.69e-11 5.12e-08
Smp_137460.1 SmLINC04339-IBu 0.92 5.70e-07 3.60e-05
Smp_137700.1 SmLINC04339-IBu 0.94 1.26e-07 1.27e-05
Smp_137720.1 SmLINC04339-IBu 0.94 8.18e-08 9.43e-06
Smp_137810.1 SmLINC04339-IBu 0.93 2.29e-07 1.91e-05
Smp_138360.1 SmLINC04339-IBu 0.92 9.21e-07 5.03e-05
Smp_139160.1 SmLINC04339-IBu 0.96 7.74e-09 1.92e-06
Smp_139240.1 SmLINC04339-IBu 0.97 6.51e-10 3.87e-07
Smp_140720.1 SmLINC04339-IBu 0.93 2.33e-07 1.93e-05
Smp_152150.1 SmLINC04339-IBu 0.90 3.29e-06 1.00e-04
Smp_155570.1 SmLINC04339-IBu 0.90 2.82e-06 1.00e-04
Smp_159650.1 SmLINC04339-IBu 0.92 9.02e-07 4.96e-05
Smp_162320.1 SmLINC04339-IBu 0.95 1.57e-08 3.09e-06
Smp_163700.1 SmLINC04339-IBu 0.95 3.47e-08 5.28e-06
Smp_164320.1 SmLINC04339-IBu 0.95 6.02e-08 7.66e-06
Smp_164400.1 SmLINC04339-IBu 0.93 2.49e-07 2.03e-05
Smp_181070.1 SmLINC04339-IBu 0.97 9.28e-10 4.86e-07
Smp_187140.1 SmLINC04339-IBu 0.97 9.70e-10 4.99e-07
Smp_194380.1 SmLINC04339-IBu 0.96 4.04e-09 1.25e-06
Smp_194910.1 SmLINC04339-IBu 0.97 5.52e-10 3.48e-07
Smp_196830.1 SmLINC04339-IBu 0.95 5.37e-08 7.08e-06
Smp_202610.1 SmLINC04339-IBu 0.92 8.65e-07 4.82e-05
Smp_203030.1 SmLINC04339-IBu 0.93 2.20e-07 1.86e-05
Smp_205580.1 SmLINC04339-IBu 0.96 2.94e-09 1.02e-06