Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04313-IBu Data

Chromosome: Chr 7 - Coordinate: Chr 7:1260999-1269148 - Strand: -


Fig. S5 for SmLINC04313-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC04313-IBu 0 0.55 -0.82 -4.39 -4.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 SmLINC04313-IBu 0.90 3.21e-06 1.00e-04
Smp_184710.1 SmLINC04313-IBu 0.93 3.49e-07 2.56e-05
Smp_193700.1 SmLINC04313-IBu 0.90 3.93e-06 1.00e-04