Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04273-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:18396244-18400139 - Strand: -


Fig. S5 for SmLINC04273-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
SmLINC04273-IBu 0 0.09 -1.29 -4.54 -6.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC04273-IBu 0.94 1.03e-07 1.10e-05
Smp_111640.1 SmLINC04273-IBu 0.92 5.16e-07 3.36e-05
Smp_125070.1 SmLINC04273-IBu 0.91 1.59e-06 7.42e-05
Smp_184710.1 SmLINC04273-IBu 0.95 2.29e-08 3.98e-06
Smp_185830.1 SmLINC04273-IBu 0.90 4.01e-06 1.00e-04
Smp_204360.1 SmLINC04273-IBu 0.93 2.84e-07 2.22e-05
Smp_205330.1 SmLINC04273-IBu 0.91 2.20e-06 9.32e-05
Smp_205450.1 SmLINC04273-IBu 0.91 1.26e-06 6.30e-05