Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04259-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:16108319-16109188 - Strand: +


Fig. S5 for SmLINC04259-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
Smp_090930.5 0 0.88 1.41 -11.45 -5.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 SmLINC04259-IBu 0.91 1.50e-06 7.11e-05
Smp_090930.5 SmLINC04259-IBu 0.94 1.37e-07 1.34e-05
Smp_109340.1 SmLINC04259-IBu 0.90 4.73e-06 1.00e-04
Smp_168800.1 SmLINC04259-IBu 0.92 8.10e-07 4.60e-05
Smp_184180.1 SmLINC04259-IBu 0.93 4.31e-07 2.96e-05
Smp_194060.1 SmLINC04259-IBu 0.90 4.86e-06 1.00e-04
Smp_205060.1 SmLINC04259-IBu 0.90 4.28e-06 1.00e-04
Smp_212510.1 SmLINC04259-IBu 0.93 4.65e-07 3.12e-05