Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04250-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:15548498-15550327 - Strand: -


Fig. 6A for SmLINC04250-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_136850.2 0 -2.73 0.98 1.99 2.74
Smp_204050.1 0 0.77 1.82 3.81 4.33
Smp_157390.1 0 3.34 4.15 5.22 5.62
SmLINC04250-IBu 0 6.51 7.95 8.09 9.23
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_172510.2 0 9.12 10.77 11.45 12.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021060.1 SmLINC04250-IBu -0.81 2.00e-04 2.40e-03
Smp_136850.2 SmLINC04250-IBu 0.80 3.00e-04 3.40e-03
Smp_157140.1 SmLINC04250-IBu 0.87 2.22e-05 4.00e-04
Smp_157390.1 SmLINC04250-IBu 0.83 1.00e-04 1.60e-03
Smp_157450.1 SmLINC04250-IBu -0.82 1.00e-04 2.00e-03
Smp_172510.2 SmLINC04250-IBu 0.80 2.00e-04 3.00e-03
Smp_204050.1 SmLINC04250-IBu 0.81 1.00e-04 2.20e-03