Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04219-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:15443581-15447245 - Strand: -


Fig. S5 for SmLINC04219-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC04219-IBu 0 -1.93 4.04 -1.93 -1.93
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC04219-IBu 0.99 1.06e-13 1.67e-09
Smp_042090.3 SmLINC04219-IBu 0.95 3.48e-08 5.29e-06
Smp_085110.3 SmLINC04219-IBu 0.90 4.59e-06 1.00e-04
Smp_098890.1 SmLINC04219-IBu 0.91 2.45e-06 1.00e-04
Smp_138080.1 SmLINC04219-IBu 0.98 6.77e-11 9.12e-08
Smp_194060.1 SmLINC04219-IBu 0.90 2.73e-06 1.00e-04