Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04217-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:15443498-15447247 - Strand: -


Fig. S5 for SmLINC04217-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04217-IBu 0 1.61 -0.99 6.16 5.49
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058660.1 SmLINC04217-IBu 0.91 1.63e-06 7.54e-05
Smp_082580.1 SmLINC04217-IBu 0.90 3.42e-06 1.00e-04
Smp_123200.1 SmLINC04217-IBu 0.96 3.64e-09 1.17e-06
Smp_134960.1 SmLINC04217-IBu 0.91 1.70e-06 7.75e-05
Smp_137320.1 SmLINC04217-IBu 0.94 8.64e-08 9.79e-06
Smp_141680.1 SmLINC04217-IBu 0.91 1.69e-06 7.73e-05
Smp_151120.1 SmLINC04217-IBu 0.90 4.56e-06 1.00e-04
Smp_163940.1 SmLINC04217-IBu 0.91 2.33e-06 9.70e-05
Smp_194960.1 SmLINC04217-IBu 0.90 4.09e-06 1.00e-04
Smp_194970.1 SmLINC04217-IBu 0.90 3.20e-06 1.00e-04
Smp_194980.1 SmLINC04217-IBu 0.90 4.34e-06 1.00e-04
Smp_200750.1 SmLINC04217-IBu 0.90 2.76e-06 1.00e-04