Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04215-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:15084521-15091606 - Strand: +


Fig. S5 for SmLINC04215-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC04215-IBu 0.90 2.53e-06 1.00e-04
Smp_021340.3 SmLINC04215-IBu 0.90 3.58e-06 1.00e-04
Smp_032120.1 SmLINC04215-IBu 0.96 6.95e-09 1.79e-06
Smp_034840.1 SmLINC04215-IBu 0.96 2.65e-09 9.56e-07
Smp_036270.3 SmLINC04215-IBu 0.92 1.11e-06 5.76e-05
Smp_059530.1 SmLINC04215-IBu 0.92 6.47e-07 3.93e-05
Smp_062070.1 SmLINC04215-IBu 0.94 1.07e-07 1.13e-05
Smp_063650.3 SmLINC04215-IBu 0.91 2.25e-06 9.47e-05
Smp_083380.2 SmLINC04215-IBu 0.92 5.72e-07 3.61e-05
Smp_084940.2 SmLINC04215-IBu 0.97 1.08e-09 5.38e-07
Smp_098370.1 SmLINC04215-IBu 0.91 1.77e-06 8.00e-05
Smp_103540.1 SmLINC04215-IBu 0.95 1.98e-08 3.61e-06
Smp_159070.3 SmLINC04215-IBu 0.95 2.52e-08 4.24e-06
Smp_159150.1 SmLINC04215-IBu 0.97 4.29e-10 2.96e-07