Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04214-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:15084539-15092880 - Strand: +


Fig. S5 for SmLINC04214-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC04214-IBu 0 -0.71 -1.81 -4.24 -4.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC04214-IBu 0.92 7.64e-07 4.41e-05
Smp_035200.3 SmLINC04214-IBu 0.91 1.43e-06 6.88e-05
Smp_036270.4 SmLINC04214-IBu 0.93 2.79e-07 2.19e-05
Smp_160230.1 SmLINC04214-IBu 0.95 5.75e-08 7.42e-06
Smp_168080.2 SmLINC04214-IBu 0.91 1.46e-06 6.97e-05
Smp_188900.1 SmLINC04214-IBu 0.91 1.44e-06 6.91e-05
Smp_195070.1 SmLINC04214-IBu 0.91 2.13e-06 9.09e-05