Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04178-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:11551988-11557840 - Strand: -


Fig. 6A for SmLINC04178-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_205930.1 0 0.31 -2.62 -7.34 -9.86
Smp_111340.6 0 0.97 -0.72 -7.78 -9.70
Smp_202490.1 0 0.07 -2.34 -9.58 -9.58
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_110400.1 0 0.09 -0.79 -8.02 -8.98
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_205460.1 0 0.98 -3.11 -8.72 -8.72
Smp_169720.1 0 0.44 -8.54 -8.54 -8.54
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_205780.1 0 1.12 -3.78 -8.26 -8.26
Smp_204660.1 0 1.01 -4.53 -7.96 -8.16
Smp_200770.1 0 1.89 0.38 -8.15 -8.15
Smp_201940.1 0 1.70 -2.07 -7.99 -7.99
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
Smp_178390.1 0 0.45 -1.39 -7.29 -7.87
Smp_205120.1 0 2.69 -1.75 -5.80 -7.84
Smp_186020.1 0 0.85 -2.69 -7.72 -7.80
Smp_200470.1 0 1.40 -2.54 -7.67 -7.67
Smp_178170.1 0 1.66 -1.97 -7.62 -7.62
Smp_019000.1 0 2.12 -4.51 -7.54 -7.54
Smp_113310.1 0 1.47 -2.62 -5.78 -7.51
Smp_049300.4 0 1.54 -4.40 -4.53 -7.24
Smp_203920.1 0 0.58 -2.39 -6.11 -7.08
Smp_134770.1 0 0.04 -2.01 -4.85 -7.07
Smp_203790.1 0 1.11 -0.83 -4.01 -6.96
Smp_204460.1 0 1.62 -2.55 -6.93 -6.93
Smp_111340.9 0 1.30 0.22 -5.61 -6.61
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_159610.1 0 2.56 -4.50 -4.50 -6.59
Smp_193480.1 0 0.76 -0.20 -6.53 -6.53
Smp_201410.1 0 0.26 -6.26 -6.26 -6.26
Smp_117620.1 0 0.28 -4.02 -5.77 -6.24
Smp_008390.1 0 0.53 -0.79 -6.20 -6.20
Smp_113550.1 0 0.10 -1.71 -6.16 -6.16
Smp_200160.1 0 0.65 -1.01 -6.08 -6.08
Smp_060760.1 0 3.40 -1.02 -6.08 -6.08
Smp_171700.1 0 2.41 -0.03 -2.60 -6.02
Smp_184860.1 0 2.74 -0.82 -5.81 -5.81
Smp_062080.1 0 0.17 -4.18 -7.09 -5.78
Smp_158010.1 0 0.21 -0.51 -5.78 -5.78
Smp_203470.1 0 2.08 0.59 -0.78 -5.76
Smp_069220.1 0 1.51 -0.88 -4.10 -5.76
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_053760.1 0 0.29 -0.47 -5.24 -5.60
Smp_202580.1 0 1.24 0.71 -2.72 -5.55
Smp_149750.1 0 1.75 -0.10 -5.34 -5.55
Smp_015190.1 0 0.66 -0.56 -4.33 -5.46
Smp_089860.1 0 4.05 -0.23 -9.08 -5.43
Smp_202670.1 0 2.19 -3.90 -5.33 -5.33
Smp_147530.1 0 2.28 -0.50 -3.10 -5.24
Smp_030010.1 0 0.62 -6.53 -3.86 -5.21
Smp_200010.1 0 6.19 -0.25 -7.50 -5.12
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09
Smp_201930.1 0 1.32 -0.08 -4.89 -5.07
Smp_171360.1 0 3.13 -2.66 -4.89 -4.89
Smp_205280.1 0 0.75 0.23 -4.69 -4.81
Smp_182940.1 0 4.10 -0.33 -4.76 -4.76
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_000250.1 0 2.54 -1.10 -4.67 -4.67
Smp_038560.1 0 0.43 -3.62 -2.65 -4.65
Smp_187010.1 0 0.47 -5.64 -3.81 -4.52
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_017080.3 0 1.61 -1.79 -3.44 -4.38
Smp_079960.1 0 1.02 -1.37 -4.93 -4.30
Smp_107590.1 0 4.34 2.46 -4.22 -4.22
Smp_049250.1 0 1.49 -2.10 -4.41 -4.17
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_205520.1 0 0.47 -0.17 -3.17 -3.98
Smp_097020.1 0 2.16 -2.18 -9.25 -3.98
Smp_094680.1 0 1.98 -4.03 -4.17 -3.96
Smp_123100.1 0 1.03 -1.57 -3.15 -3.94
Smp_130700.1 0 0.19 -1.83 -3.63 -3.85
Smp_020840.1 0 0.75 -4.50 -3.36 -3.70
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_202590.1 0 0.93 -0.68 -5.97 -3.65
Smp_080920.1 0 1.28 -1.93 -2.08 -3.64
Smp_188780.1 0 0.05 -9.06 -3.40 -3.54
Smp_201420.1 0 2.63 1.48 -3.49 -3.49
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_205000.1 0 4.78 1.99 -1.34 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_201790.1 0 4.46 -3.38 -3.38 -3.38
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_106930.1 0 3.72 0.12 -3.92 -3.35
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_080920.2 0 2.36 -1.44 -1.25 -3.25
Smp_189120.1 0 3.83 -0.95 -5.44 -3.13
Smp_072320.1 0 3.42 -1.99 -6.26 -3.11
Smp_163710.1 0 0.07 -4.89 -1.71 -2.93
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_124140.1 0 2.40 0.33 -1.66 -2.77
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_202560.1 0 4.87 -1.17 -2.65 -2.65
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_165050.1 0 0.40 -6.48 -1.35 -2.34
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_200900.1 0 1.23 -4.76 -2.64 -1.93
Smp_202160.1 0 2.79 -1.17 -2.66 -1.06
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_136240.5 0 8.50 0.00 0.00 0.00
Smp_129930.1 0 7.26 0.00 0.00 0.00
Smp_204950.1 0 5.97 5.20 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_177380.1 0 7.51 1.65 4.19 0.67
Smp_204190.1 0 3.21 -3.16 -0.75 1.19
Smp_204650.1 0 7.45 2.61 0.00 2.29
Smp_201000.1 0 6.84 0.00 2.13 2.38
Smp_139700.1 0 6.89 4.15 2.03 5.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000250.1 SmLINC04178-IBu 0.95 1.81e-08 3.19e-06
Smp_006960.1 SmLINC04178-IBu 0.80 3.00e-04 3.20e-03
Smp_008390.1 SmLINC04178-IBu 0.88 1.43e-05 3.00e-04
Smp_015190.1 SmLINC04178-IBu 0.84 7.11e-05 1.10e-03
Smp_017080.3 SmLINC04178-IBu 0.95 2.26e-08 3.71e-06
Smp_019000.1 SmLINC04178-IBu 0.89 5.22e-06 1.00e-04
Smp_020840.1 SmLINC04178-IBu 0.87 2.31e-05 4.00e-04
Smp_021460.1 SmLINC04178-IBu 0.85 4.53e-05 7.00e-04
Smp_030010.1 SmLINC04178-IBu 0.85 5.61e-05 9.00e-04
Smp_033930.1 SmLINC04178-IBu 0.91 1.25e-06 6.04e-05
Smp_035020.1 SmLINC04178-IBu 0.86 2.51e-05 5.00e-04
Smp_038560.1 SmLINC04178-IBu 0.82 1.00e-04 1.70e-03
Smp_048060.1 SmLINC04178-IBu 0.82 1.00e-04 1.80e-03
Smp_049250.1 SmLINC04178-IBu 0.88 1.12e-05 2.00e-04
Smp_049300.3 SmLINC04178-IBu 0.96 4.66e-09 1.28e-06
Smp_049300.4 SmLINC04178-IBu 0.90 4.06e-06 1.00e-04
Smp_053760.1 SmLINC04178-IBu 0.80 3.00e-04 3.10e-03
Smp_056680.2 SmLINC04178-IBu 0.80 3.00e-04 3.30e-03
Smp_056680.3 SmLINC04178-IBu 0.80 3.00e-04 3.30e-03
Smp_060760.1 SmLINC04178-IBu 0.86 3.54e-05 6.00e-04
Smp_062080.1 SmLINC04178-IBu 0.84 8.73e-05 1.20e-03
Smp_069220.1 SmLINC04178-IBu 0.87 1.71e-05 3.00e-04
Smp_072320.1 SmLINC04178-IBu 0.93 4.72e-07 3.02e-05
Smp_079280.1 SmLINC04178-IBu 0.81 2.00e-04 2.60e-03
Smp_079960.1 SmLINC04178-IBu 0.89 8.16e-06 2.00e-04
Smp_080920.1 SmLINC04178-IBu 0.94 1.81e-07 1.54e-05
Smp_080920.2 SmLINC04178-IBu 0.95 5.70e-08 6.98e-06
Smp_089860.1 SmLINC04178-IBu 0.92 7.85e-07 4.32e-05
Smp_094680.1 SmLINC04178-IBu 0.92 6.23e-07 3.67e-05
Smp_097020.1 SmLINC04178-IBu 0.96 5.52e-09 1.43e-06
Smp_103140.1 SmLINC04178-IBu 0.95 1.47e-08 2.77e-06
Smp_106930.1 SmLINC04178-IBu 0.98 9.30e-11 1.01e-07
Smp_107590.1 SmLINC04178-IBu 0.86 2.49e-05 5.00e-04
Smp_110400.1 SmLINC04178-IBu 0.83 1.00e-04 1.50e-03
Smp_111340.6 SmLINC04178-IBu 0.91 2.03e-06 8.50e-05
Smp_111340.9 SmLINC04178-IBu 0.88 9.48e-06 2.00e-04
Smp_111640.1 SmLINC04178-IBu 0.83 1.00e-04 1.50e-03
Smp_113310.1 SmLINC04178-IBu 0.94 1.85e-07 1.57e-05
Smp_113550.1 SmLINC04178-IBu 0.86 2.68e-05 5.00e-04
Smp_117620.1 SmLINC04178-IBu 0.81 2.00e-04 2.30e-03
Smp_123100.1 SmLINC04178-IBu 0.86 2.53e-05 5.00e-04
Smp_124140.1 SmLINC04178-IBu 0.92 5.30e-07 3.28e-05
Smp_125070.1 SmLINC04178-IBu 0.91 1.42e-06 6.60e-05
Smp_129930.1 SmLINC04178-IBu 0.87 1.66e-05 3.00e-04
Smp_130700.1 SmLINC04178-IBu 0.85 4.57e-05 8.00e-04
Smp_134770.1 SmLINC04178-IBu 0.86 3.65e-05 6.00e-04
Smp_136240.5 SmLINC04178-IBu 0.93 4.24e-07 2.80e-05
Smp_139700.1 SmLINC04178-IBu 0.83 9.86e-05 1.40e-03
Smp_142260.1 SmLINC04178-IBu 0.82 1.00e-04 1.70e-03
Smp_143450.1 SmLINC04178-IBu 0.94 1.33e-07 1.25e-05
Smp_145100.1 SmLINC04178-IBu 0.96 5.80e-09 1.48e-06
Smp_147530.1 SmLINC04178-IBu 0.91 1.88e-06 8.05e-05
Smp_148840.1 SmLINC04178-IBu 0.95 3.05e-08 4.55e-06
Smp_149750.1 SmLINC04178-IBu 0.92 9.47e-07 4.93e-05
Smp_158010.1 SmLINC04178-IBu 0.81 1.00e-04 2.20e-03
Smp_159610.1 SmLINC04178-IBu 0.95 4.09e-08 5.56e-06
Smp_163710.1 SmLINC04178-IBu 0.81 2.00e-04 2.40e-03
Smp_165050.1 SmLINC04178-IBu 0.80 3.00e-04 3.30e-03
Smp_169720.1 SmLINC04178-IBu 0.85 4.92e-05 8.00e-04
Smp_171360.1 SmLINC04178-IBu 0.92 9.71e-07 5.02e-05
Smp_171700.1 SmLINC04178-IBu 0.89 4.87e-06 1.00e-04
Smp_177380.1 SmLINC04178-IBu 0.92 9.85e-07 5.07e-05
Smp_178170.1 SmLINC04178-IBu 0.88 1.41e-05 3.00e-04
Smp_178390.1 SmLINC04178-IBu 0.83 9.15e-05 1.30e-03
Smp_179390.1 SmLINC04178-IBu 0.88 1.40e-05 3.00e-04
Smp_179670.1 SmLINC04178-IBu 0.81 1.00e-04 2.20e-03
Smp_182090.1 SmLINC04178-IBu 0.85 5.71e-05 9.00e-04
Smp_182940.1 SmLINC04178-IBu 0.90 2.55e-06 1.00e-04
Smp_184710.1 SmLINC04178-IBu 0.87 2.25e-05 4.00e-04
Smp_184860.1 SmLINC04178-IBu 0.83 1.00e-04 1.60e-03
Smp_185680.1 SmLINC04178-IBu 0.89 7.39e-06 2.00e-04
Smp_185830.1 SmLINC04178-IBu 0.90 3.79e-06 1.00e-04
Smp_186020.1 SmLINC04178-IBu 0.90 3.19e-06 1.00e-04
Smp_187010.1 SmLINC04178-IBu 0.90 3.06e-06 1.00e-04
Smp_188780.1 SmLINC04178-IBu 0.86 2.87e-05 5.00e-04
Smp_189120.1 SmLINC04178-IBu 0.85 5.12e-05 8.00e-04
Smp_193480.1 SmLINC04178-IBu 0.82 1.00e-04 1.90e-03
Smp_196680.1 SmLINC04178-IBu 0.96 1.34e-08 2.61e-06
Smp_200010.1 SmLINC04178-IBu 0.90 4.79e-06 1.00e-04
Smp_200160.1 SmLINC04178-IBu 0.88 1.01e-05 2.00e-04
Smp_200470.1 SmLINC04178-IBu 0.88 1.17e-05 2.00e-04
Smp_200770.1 SmLINC04178-IBu 0.95 1.94e-08 3.35e-06
Smp_200900.1 SmLINC04178-IBu 0.82 1.00e-04 2.10e-03
Smp_201000.1 SmLINC04178-IBu 0.98 6.79e-11 8.34e-08
Smp_201230.1 SmLINC04178-IBu 0.83 9.55e-05 1.30e-03
Smp_201410.1 SmLINC04178-IBu 0.86 3.69e-05 6.00e-04
Smp_201420.1 SmLINC04178-IBu 0.88 1.18e-05 3.00e-04
Smp_201790.1 SmLINC04178-IBu 0.91 2.03e-06 8.51e-05
Smp_201930.1 SmLINC04178-IBu 0.86 3.33e-05 6.00e-04
Smp_201940.1 SmLINC04178-IBu 0.90 3.37e-06 1.00e-04
Smp_202160.1 SmLINC04178-IBu 0.94 1.34e-07 1.25e-05
Smp_202230.1 SmLINC04178-IBu 0.83 1.00e-04 1.60e-03
Smp_202490.1 SmLINC04178-IBu 0.83 1.00e-04 1.60e-03
Smp_202560.1 SmLINC04178-IBu 0.98 4.19e-11 6.13e-08
Smp_202580.1 SmLINC04178-IBu 0.85 5.89e-05 9.00e-04
Smp_202590.1 SmLINC04178-IBu 0.81 1.00e-04 2.20e-03
Smp_202670.1 SmLINC04178-IBu 0.87 2.15e-05 4.00e-04
Smp_202720.1 SmLINC04178-IBu 0.94 1.06e-07 1.07e-05
Smp_203470.1 SmLINC04178-IBu 0.87 1.97e-05 4.00e-04
Smp_203550.1 SmLINC04178-IBu 0.87 2.33e-05 4.00e-04
Smp_203790.1 SmLINC04178-IBu 0.81 2.00e-04 2.70e-03
Smp_203920.1 SmLINC04178-IBu 0.84 6.11e-05 9.00e-04
Smp_204190.1 SmLINC04178-IBu 0.95 1.48e-08 2.79e-06
Smp_204360.1 SmLINC04178-IBu 0.88 1.18e-05 3.00e-04
Smp_204460.1 SmLINC04178-IBu 0.93 2.23e-07 1.79e-05
Smp_204650.1 SmLINC04178-IBu 0.93 3.68e-07 2.54e-05
Smp_204660.1 SmLINC04178-IBu 0.89 7.29e-06 2.00e-04
Smp_204950.1 SmLINC04178-IBu 0.87 1.78e-05 4.00e-04
Smp_205000.1 SmLINC04178-IBu 0.93 2.10e-07 1.71e-05
Smp_205120.1 SmLINC04178-IBu 0.87 1.61e-05 3.00e-04
Smp_205220.1 SmLINC04178-IBu 0.84 7.61e-05 1.10e-03
Smp_205280.1 SmLINC04178-IBu 0.80 2.00e-04 2.80e-03
Smp_205330.1 SmLINC04178-IBu 0.81 2.00e-04 2.40e-03
Smp_205460.1 SmLINC04178-IBu 0.86 3.14e-05 6.00e-04
Smp_205520.1 SmLINC04178-IBu 0.83 1.00e-04 1.50e-03
Smp_205780.1 SmLINC04178-IBu 0.81 1.00e-04 2.20e-03
Smp_205930.1 SmLINC04178-IBu 0.86 3.69e-05 6.00e-04
Fig. S5 for SmLINC04178-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125070.1 SmLINC04178-IBu 0.91 1.42e-06 6.85e-05
Smp_185830.1 SmLINC04178-IBu 0.90 3.79e-06 1.00e-04