Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04170-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:11489495-11491498 - Strand: +


Fig. S5 for SmLINC04170-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
SmLINC04170-IBu 0 0.99 -1.39 -7.39 -3.61

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111640.1 SmLINC04170-IBu 0.93 2.84e-07 2.22e-05
Smp_182090.1 SmLINC04170-IBu 0.90 2.92e-06 1.00e-04
Smp_184710.1 SmLINC04170-IBu 0.95 4.60e-08 6.39e-06
Smp_185170.1 SmLINC04170-IBu 0.91 1.73e-06 7.87e-05
Smp_185680.1 SmLINC04170-IBu 0.94 1.33e-07 1.31e-05
Smp_185830.1 SmLINC04170-IBu 0.90 4.02e-06 1.00e-04
Smp_204360.1 SmLINC04170-IBu 0.92 6.75e-07 4.05e-05