Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04108-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:9571956-9572271 - Strand: -


Fig. S5 for SmLINC04108-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC04108-IBu 0 -0.24 -0.89 -7.24 -4.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC04108-IBu 0.92 5.67e-07 3.59e-05
Smp_035200.3 SmLINC04108-IBu 0.91 1.21e-06 6.13e-05
Smp_036270.4 SmLINC04108-IBu 0.96 1.44e-08 2.91e-06
Smp_111640.1 SmLINC04108-IBu 0.92 1.09e-06 5.70e-05
Smp_125070.1 SmLINC04108-IBu 0.90 4.74e-06 1.00e-04
Smp_184710.1 SmLINC04108-IBu 0.92 1.09e-06 5.67e-05
Smp_204360.1 SmLINC04108-IBu 0.91 1.68e-06 7.71e-05
Smp_205330.1 SmLINC04108-IBu 0.92 7.55e-07 4.38e-05