Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04106-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:9564214-9572144 - Strand: -


Fig. 7A S3 for SmLINC04106-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172460.1 SmLINC04106-IBu 0.59 1.89e-02 5.50e-02
Fig. 6A for SmLINC04106-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_150070.1 0 0.81 -2.65 -7.50 -9.92
Smp_205930.1 0 0.31 -2.62 -7.34 -9.86
Smp_111340.6 0 0.97 -0.72 -7.78 -9.70
Smp_202490.1 0 0.07 -2.34 -9.58 -9.58
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_110400.1 0 0.09 -0.79 -8.02 -8.98
Smp_184400.1 0 0.15 -4.14 -8.88 -8.88
Smp_117000.1 0 1.20 -0.81 -7.47 -8.86
Smp_205460.1 0 0.98 -3.11 -8.72 -8.72
Smp_183080.1 0 1.61 -2.18 -8.70 -8.70
Smp_143870.1 0 -0.39 -1.89 -6.40 -8.68
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_026160.2 0 0.93 -2.82 -7.30 -8.39
Smp_178030.1 0 0.35 -4.71 -5.00 -8.33
Smp_185560.1 0 0.07 -2.33 -8.32 -8.32
Smp_204660.1 0 1.01 -4.53 -7.96 -8.16
Smp_200770.1 0 1.89 0.38 -8.15 -8.15
Smp_201280.1 0 0.50 0.74 -4.14 -8.03
Smp_201940.1 0 1.70 -2.07 -7.99 -7.99
Smp_178390.1 0 0.45 -1.39 -7.29 -7.87
Smp_205120.1 0 2.69 -1.75 -5.80 -7.84
Smp_178890.1 0 0.36 -2.67 -7.83 -7.83
Smp_186020.1 0 0.85 -2.69 -7.72 -7.80
Smp_200470.1 0 1.40 -2.54 -7.67 -7.67
Smp_178170.1 0 1.66 -1.97 -7.62 -7.62
Smp_107810.1 0 0.34 -1.79 -7.61 -7.61
Smp_107860.1 0 0.34 -1.79 -7.61 -7.61
Smp_110390.1 0 0.34 -1.79 -7.61 -7.61
Smp_019000.1 0 2.12 -4.51 -7.54 -7.54
Smp_113310.1 0 1.47 -2.62 -5.78 -7.51
Smp_136600.1 0 0.07 -2.48 -5.77 -7.33
Smp_049300.4 0 1.54 -4.40 -4.53 -7.24
Smp_203920.1 0 0.58 -2.39 -6.11 -7.08
Smp_134770.1 0 0.04 -2.01 -4.85 -7.07
Smp_178960.1 0 -0.22 -5.20 -9.36 -7.07
Smp_117990.1 0 -0.28 -2.23 -6.60 -7.02
Smp_203790.1 0 1.11 -0.83 -4.01 -6.96
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94
Smp_204460.1 0 1.62 -2.55 -6.93 -6.93
Smp_201390.1 0 0.48 -0.11 -6.75 -6.75
Smp_111340.9 0 1.30 0.22 -5.61 -6.61
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_159610.1 0 2.56 -4.50 -4.50 -6.59
Smp_204630.1 0 0.46 -1.10 -5.17 -6.57
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32
Smp_185440.1 0 -0.12 -1.84 -5.54 -6.28
Smp_117620.1 0 0.28 -4.02 -5.77 -6.24
Smp_074610.1 0 -0.17 -3.08 -8.53 -6.22
Smp_008390.1 0 0.53 -0.79 -6.20 -6.20
Smp_060760.1 0 3.40 -1.02 -6.08 -6.08
Smp_171700.1 0 2.41 -0.03 -2.60 -6.02
Smp_184860.1 0 2.74 -0.82 -5.81 -5.81
Smp_183790.1 0 1.84 -0.43 -2.43 -5.81
Smp_062080.1 0 0.17 -4.18 -7.09 -5.78
Smp_203470.1 0 2.08 0.59 -0.78 -5.76
Smp_069220.1 0 1.51 -0.88 -4.10 -5.76
Smp_049300.2 0 0.52 -2.77 -4.62 -5.61
Smp_149750.1 0 1.75 -0.10 -5.34 -5.55
Smp_015190.1 0 0.66 -0.56 -4.33 -5.46
Smp_089860.1 0 4.05 -0.23 -9.08 -5.43
Smp_202670.1 0 2.19 -3.90 -5.33 -5.33
Smp_147530.1 0 2.28 -0.50 -3.10 -5.24
Smp_030010.1 0 0.62 -6.53 -3.86 -5.21
Smp_200010.1 0 6.19 -0.25 -7.50 -5.12
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09
Smp_201930.1 0 1.32 -0.08 -4.89 -5.07
Smp_119130.1 0 -0.11 -2.24 -9.20 -4.94
Smp_171360.1 0 3.13 -2.66 -4.89 -4.89
Smp_205280.1 0 0.75 0.23 -4.69 -4.81
Smp_131830.1 0 1.24 0.03 -5.02 -4.76
Smp_182940.1 0 4.10 -0.33 -4.76 -4.76
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_000250.1 0 2.54 -1.10 -4.67 -4.67
Smp_038560.1 0 0.43 -3.62 -2.65 -4.65
Smp_108390.1 0 -0.09 -2.06 -5.55 -4.63
Smp_187010.1 0 0.47 -5.64 -3.81 -4.52
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_005260.1 0 0.06 -1.49 -4.55 -4.46
Smp_017080.3 0 1.61 -1.79 -3.44 -4.38
Smp_079960.1 0 1.02 -1.37 -4.93 -4.30
Smp_107590.1 0 4.34 2.46 -4.22 -4.22
Smp_049250.1 0 1.49 -2.10 -4.41 -4.17
Smp_082430.1 0 0.56 -9.20 -5.69 -4.14
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_160200.1 0 -0.04 -2.03 -4.28 -4.07
Smp_097020.1 0 2.16 -2.18 -9.25 -3.98
Smp_094680.1 0 1.98 -4.03 -4.17 -3.96
Smp_123100.1 0 1.03 -1.57 -3.15 -3.94
Smp_020840.1 0 0.75 -4.50 -3.36 -3.70
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_080920.1 0 1.28 -1.93 -2.08 -3.64
Smp_201790.1 0 4.46 -3.38 -3.38 -3.38
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_106930.1 0 3.72 0.12 -3.92 -3.35
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_080920.2 0 2.36 -1.44 -1.25 -3.25
Smp_163400.1 0 -0.26 -5.23 -5.31 -3.19
Smp_189120.1 0 3.83 -0.95 -5.44 -3.13
Smp_072320.1 0 3.42 -1.99 -6.26 -3.11
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_124140.1 0 2.40 0.33 -1.66 -2.77
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_202560.1 0 4.87 -1.17 -2.65 -2.65
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_200900.1 0 1.23 -4.76 -2.64 -1.93
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_177380.1 0 7.51 1.65 4.19 0.67
Smp_204190.1 0 3.21 -3.16 -0.75 1.19
Smp_204650.1 0 7.45 2.61 0.00 2.29
Smp_201000.1 0 6.84 0.00 2.13 2.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000250.1 SmLINC04106-IBu 0.84 8.59e-05 1.20e-03
Smp_005080.1 SmLINC04106-IBu 0.82 1.00e-04 2.00e-03
Smp_005260.1 SmLINC04106-IBu 0.83 1.00e-04 1.50e-03
Smp_006960.1 SmLINC04106-IBu 0.81 2.00e-04 2.60e-03
Smp_008390.1 SmLINC04106-IBu 0.88 1.16e-05 2.00e-04
Smp_015190.1 SmLINC04106-IBu 0.93 2.82e-07 2.10e-05
Smp_017080.3 SmLINC04106-IBu 0.88 1.26e-05 3.00e-04
Smp_019000.1 SmLINC04106-IBu 0.94 1.62e-07 1.43e-05
Smp_020840.1 SmLINC04106-IBu 0.83 1.00e-04 1.40e-03
Smp_021460.1 SmLINC04106-IBu 0.87 1.87e-05 4.00e-04
Smp_026160.2 SmLINC04106-IBu 0.80 2.00e-04 2.80e-03
Smp_030010.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_032320.1 SmLINC04106-IBu 0.89 5.12e-06 1.00e-04
Smp_033930.1 SmLINC04106-IBu 0.88 1.07e-05 2.00e-04
Smp_035200.3 SmLINC04106-IBu 0.80 3.00e-04 3.20e-03
Smp_036270.4 SmLINC04106-IBu 0.81 2.00e-04 2.60e-03
Smp_038560.1 SmLINC04106-IBu 0.82 1.00e-04 1.80e-03
Smp_049250.1 SmLINC04106-IBu 0.93 2.27e-07 1.81e-05
Smp_049300.2 SmLINC04106-IBu 0.92 8.79e-07 4.68e-05
Smp_049300.3 SmLINC04106-IBu 0.94 1.55e-07 1.39e-05
Smp_049300.4 SmLINC04106-IBu 0.90 3.45e-06 1.00e-04
Smp_060760.1 SmLINC04106-IBu 0.97 2.27e-09 8.04e-07
Smp_062080.1 SmLINC04106-IBu 0.84 6.05e-05 9.00e-04
Smp_069220.1 SmLINC04106-IBu 0.96 4.22e-09 1.20e-06
Smp_072320.1 SmLINC04106-IBu 0.81 1.00e-04 2.20e-03
Smp_074610.1 SmLINC04106-IBu 0.85 5.71e-05 9.00e-04
Smp_079960.1 SmLINC04106-IBu 0.95 2.86e-08 4.35e-06
Smp_080920.1 SmLINC04106-IBu 0.95 2.22e-08 3.67e-06
Smp_080920.2 SmLINC04106-IBu 0.91 1.72e-06 7.57e-05
Smp_082430.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_089860.1 SmLINC04106-IBu 0.93 3.22e-07 2.31e-05
Smp_094680.1 SmLINC04106-IBu 0.88 1.40e-05 3.00e-04
Smp_095460.1 SmLINC04106-IBu 0.80 3.00e-04 3.20e-03
Smp_097020.1 SmLINC04106-IBu 0.89 8.67e-06 2.00e-04
Smp_103140.1 SmLINC04106-IBu 0.90 3.55e-06 1.00e-04
Smp_106930.1 SmLINC04106-IBu 0.94 1.93e-07 1.62e-05
Smp_107590.1 SmLINC04106-IBu 0.91 1.34e-06 6.33e-05
Smp_107810.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_107860.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_108390.1 SmLINC04106-IBu 0.82 1.00e-04 1.80e-03
Smp_109340.1 SmLINC04106-IBu 0.80 3.00e-04 3.40e-03
Smp_110390.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_110400.1 SmLINC04106-IBu 0.89 5.58e-06 1.00e-04
Smp_111340.6 SmLINC04106-IBu 0.94 1.82e-07 1.55e-05
Smp_111340.9 SmLINC04106-IBu 0.87 2.06e-05 4.00e-04
Smp_111640.1 SmLINC04106-IBu 0.89 6.83e-06 2.00e-04
Smp_111710.1 SmLINC04106-IBu 0.86 3.58e-05 6.00e-04
Smp_112090.1 SmLINC04106-IBu 0.85 4.63e-05 8.00e-04
Smp_113310.1 SmLINC04106-IBu 0.93 4.38e-07 2.87e-05
Smp_117000.1 SmLINC04106-IBu 0.86 2.59e-05 5.00e-04
Smp_117620.1 SmLINC04106-IBu 0.90 2.51e-06 9.89e-05
Smp_117990.1 SmLINC04106-IBu 0.81 1.00e-04 2.20e-03
Smp_119130.1 SmLINC04106-IBu 0.87 1.65e-05 3.00e-04
Smp_123100.1 SmLINC04106-IBu 0.88 1.13e-05 2.00e-04
Smp_124140.1 SmLINC04106-IBu 0.92 5.51e-07 3.37e-05
Smp_125070.1 SmLINC04106-IBu 0.84 7.35e-05 1.10e-03
Smp_131830.1 SmLINC04106-IBu 0.91 2.36e-06 9.46e-05
Smp_134770.1 SmLINC04106-IBu 0.80 2.00e-04 2.90e-03
Smp_136600.1 SmLINC04106-IBu 0.89 7.24e-06 2.00e-04
Smp_142260.1 SmLINC04106-IBu 0.82 1.00e-04 2.10e-03
Smp_143450.1 SmLINC04106-IBu 0.83 9.54e-05 1.30e-03
Smp_143870.1 SmLINC04106-IBu 0.83 9.15e-05 1.30e-03
Smp_145100.1 SmLINC04106-IBu 0.80 2.00e-04 2.80e-03
Smp_147530.1 SmLINC04106-IBu 0.88 1.13e-05 2.00e-04
Smp_148840.1 SmLINC04106-IBu 0.91 1.64e-06 7.30e-05
Smp_149750.1 SmLINC04106-IBu 0.93 3.76e-07 2.57e-05
Smp_150070.1 SmLINC04106-IBu 0.89 5.13e-06 1.00e-04
Smp_159610.1 SmLINC04106-IBu 0.93 2.78e-07 2.08e-05
Smp_160200.1 SmLINC04106-IBu 0.92 1.12e-06 5.58e-05
Smp_163400.1 SmLINC04106-IBu 0.83 1.00e-04 1.60e-03
Smp_165510.1 SmLINC04106-IBu 0.85 5.19e-05 8.00e-04
Smp_171360.1 SmLINC04106-IBu 0.90 4.68e-06 1.00e-04
Smp_171700.1 SmLINC04106-IBu 0.85 4.20e-05 7.00e-04
Smp_177380.1 SmLINC04106-IBu 0.82 1.00e-04 2.00e-03
Smp_178030.1 SmLINC04106-IBu 0.82 1.00e-04 1.90e-03
Smp_178170.1 SmLINC04106-IBu 0.90 2.56e-06 1.00e-04
Smp_178390.1 SmLINC04106-IBu 0.83 1.00e-04 1.50e-03
Smp_178890.1 SmLINC04106-IBu 0.87 2.38e-05 4.00e-04
Smp_178960.1 SmLINC04106-IBu 0.82 1.00e-04 1.80e-03
Smp_182940.1 SmLINC04106-IBu 0.86 3.50e-05 6.00e-04
Smp_183080.1 SmLINC04106-IBu 0.88 1.30e-05 3.00e-04
Smp_183570.1 SmLINC04106-IBu 0.85 4.76e-05 8.00e-04
Smp_183790.1 SmLINC04106-IBu 0.83 9.88e-05 1.40e-03
Smp_184400.1 SmLINC04106-IBu 0.85 4.49e-05 7.00e-04
Smp_184710.1 SmLINC04106-IBu 0.92 1.04e-06 5.31e-05
Smp_184860.1 SmLINC04106-IBu 0.92 5.96e-07 3.56e-05
Smp_185170.1 SmLINC04106-IBu 0.85 5.96e-05 9.00e-04
Smp_185440.1 SmLINC04106-IBu 0.85 5.66e-05 9.00e-04
Smp_185560.1 SmLINC04106-IBu 0.85 4.46e-05 7.00e-04
Smp_185680.1 SmLINC04106-IBu 0.87 1.65e-05 3.00e-04
Smp_185830.1 SmLINC04106-IBu 0.90 3.36e-06 1.00e-04
Smp_186020.1 SmLINC04106-IBu 0.93 3.99e-07 2.68e-05
Smp_187010.1 SmLINC04106-IBu 0.84 8.80e-05 1.20e-03
Smp_189120.1 SmLINC04106-IBu 0.91 1.29e-06 6.17e-05
Smp_193700.1 SmLINC04106-IBu 0.82 1.00e-04 1.90e-03
Smp_196680.1 SmLINC04106-IBu 0.92 5.29e-07 3.27e-05
Smp_200010.1 SmLINC04106-IBu 0.89 5.36e-06 1.00e-04
Smp_200470.1 SmLINC04106-IBu 0.89 7.08e-06 2.00e-04
Smp_200480.1 SmLINC04106-IBu 0.94 8.01e-08 8.81e-06
Smp_200770.1 SmLINC04106-IBu 0.93 3.93e-07 2.66e-05
Smp_200900.1 SmLINC04106-IBu 0.85 5.70e-05 9.00e-04
Smp_201000.1 SmLINC04106-IBu 0.89 7.16e-06 2.00e-04
Smp_201230.1 SmLINC04106-IBu 0.83 9.25e-05 1.30e-03
Smp_201280.1 SmLINC04106-IBu 0.89 6.49e-06 1.00e-04
Smp_201390.1 SmLINC04106-IBu 0.88 9.17e-06 2.00e-04
Smp_201790.1 SmLINC04106-IBu 0.89 6.25e-06 1.00e-04
Smp_201930.1 SmLINC04106-IBu 0.90 3.32e-06 1.00e-04
Smp_201940.1 SmLINC04106-IBu 0.81 1.00e-04 2.20e-03
Smp_202490.1 SmLINC04106-IBu 0.83 1.00e-04 1.60e-03
Smp_202560.1 SmLINC04106-IBu 0.84 7.32e-05 1.10e-03
Smp_202670.1 SmLINC04106-IBu 0.91 2.39e-06 9.56e-05
Smp_202720.1 SmLINC04106-IBu 0.92 9.39e-07 4.90e-05
Smp_203470.1 SmLINC04106-IBu 0.94 1.65e-07 1.45e-05
Smp_203790.1 SmLINC04106-IBu 0.84 8.08e-05 1.20e-03
Smp_203920.1 SmLINC04106-IBu 0.91 1.30e-06 6.21e-05
Smp_204190.1 SmLINC04106-IBu 0.83 1.00e-04 1.50e-03
Smp_204360.1 SmLINC04106-IBu 0.88 1.51e-05 3.00e-04
Smp_204460.1 SmLINC04106-IBu 0.88 1.51e-05 3.00e-04
Smp_204630.1 SmLINC04106-IBu 0.85 5.65e-05 9.00e-04
Smp_204650.1 SmLINC04106-IBu 0.95 2.13e-08 3.57e-06
Smp_204660.1 SmLINC04106-IBu 0.86 2.80e-05 5.00e-04
Smp_205120.1 SmLINC04106-IBu 0.91 1.22e-06 5.93e-05
Smp_205220.1 SmLINC04106-IBu 0.90 3.67e-06 1.00e-04
Smp_205280.1 SmLINC04106-IBu 0.89 6.78e-06 2.00e-04
Smp_205450.1 SmLINC04106-IBu 0.84 6.14e-05 9.00e-04
Smp_205460.1 SmLINC04106-IBu 0.88 1.01e-05 2.00e-04
Smp_205930.1 SmLINC04106-IBu 0.82 1.00e-04 1.80e-03
Fig. S5 for SmLINC04106-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184710.1 SmLINC04106-IBu 0.92 1.04e-06 5.52e-05
Smp_185830.1 SmLINC04106-IBu 0.90 3.36e-06 1.00e-04