Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04094-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:8619340-8620786 - Strand: +


Fig. S5 for SmLINC04094-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC04094-IBu 0 0.08 -1.37 -3.97 -4.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC04094-IBu 0.92 7.13e-07 4.21e-05
Smp_111640.1 SmLINC04094-IBu 0.93 2.33e-07 1.93e-05
Smp_184710.1 SmLINC04094-IBu 0.96 1.03e-08 2.34e-06
Smp_185170.1 SmLINC04094-IBu 0.90 2.98e-06 1.00e-04
Smp_204360.1 SmLINC04094-IBu 0.90 2.54e-06 1.00e-04
Smp_205450.1 SmLINC04094-IBu 0.92 9.59e-07 5.18e-05