Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04088-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:8358174-8358931 - Strand: +


Fig. S5 for SmLINC04088-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04088-IBu 0 -1.76 -2.21 1.40 5.36
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC04088-IBu 0.92 1.00e-06 5.35e-05
Smp_016490.2 SmLINC04088-IBu 0.91 1.45e-06 6.96e-05
Smp_037720.1 SmLINC04088-IBu 0.92 5.27e-07 3.41e-05
Smp_041540.1 SmLINC04088-IBu 0.99 1.07e-13 1.68e-09
Smp_070540.1 SmLINC04088-IBu 0.97 5.68e-10 3.54e-07
Smp_086450.3 SmLINC04088-IBu 0.91 2.03e-06 8.80e-05
Smp_089270.1 SmLINC04088-IBu 0.92 6.75e-07 4.05e-05
Smp_102780.1 SmLINC04088-IBu 0.90 2.89e-06 1.00e-04
Smp_105450.1 SmLINC04088-IBu 0.97 1.33e-09 6.13e-07
Smp_105450.2 SmLINC04088-IBu 0.97 2.30e-10 1.98e-07
Smp_126340.1 SmLINC04088-IBu 0.96 5.49e-09 1.53e-06
Smp_130100.1 SmLINC04088-IBu 0.94 1.89e-07 1.67e-05
Smp_130970.1 SmLINC04088-IBu 0.91 2.09e-06 8.97e-05
Smp_131410.1 SmLINC04088-IBu 0.90 4.30e-06 1.00e-04
Smp_136730.1 SmLINC04088-IBu 0.95 2.68e-08 4.43e-06
Smp_137460.1 SmLINC04088-IBu 0.98 1.09e-10 1.23e-07
Smp_137700.1 SmLINC04088-IBu 0.94 1.38e-07 1.35e-05
Smp_138360.1 SmLINC04088-IBu 0.96 1.23e-08 2.62e-06
Smp_139160.1 SmLINC04088-IBu 0.95 2.87e-08 4.64e-06
Smp_139240.1 SmLINC04088-IBu 0.92 6.18e-07 3.81e-05
Smp_140720.1 SmLINC04088-IBu 0.92 8.83e-07 4.89e-05
Smp_152150.1 SmLINC04088-IBu 0.98 8.28e-12 2.45e-08
Smp_162320.1 SmLINC04088-IBu 0.92 8.14e-07 4.61e-05
Smp_164400.1 SmLINC04088-IBu 0.99 1.39e-14 4.85e-10
Smp_167830.1 SmLINC04088-IBu 0.92 8.01e-07 4.56e-05
Smp_170840.1 SmLINC04088-IBu 0.94 1.07e-07 1.13e-05
Smp_181070.1 SmLINC04088-IBu 0.96 3.35e-09 1.11e-06
Smp_187140.1 SmLINC04088-IBu 0.93 4.43e-07 3.02e-05
Smp_194910.1 SmLINC04088-IBu 0.94 7.52e-08 8.91e-06
Smp_203030.1 SmLINC04088-IBu 0.92 9.61e-07 5.19e-05
Smp_205580.1 SmLINC04088-IBu 0.92 9.39e-07 5.10e-05