Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04085-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:8349594-8355772 - Strand: -


Fig. S5 for SmLINC04085-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC04085-IBu 0 0.00 5.91 8.89 9.26
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC04085-IBu -0.90 2.71e-06 1.00e-04
Smp_031040.1 SmLINC04085-IBu 0.91 1.71e-06 7.80e-05
Smp_033260.1 SmLINC04085-IBu 0.93 2.45e-07 2.00e-05
Smp_038870.2 SmLINC04085-IBu 0.90 3.92e-06 1.00e-04
Smp_040970.2 SmLINC04085-IBu 0.93 4.08e-07 2.85e-05
Smp_045200.1 SmLINC04085-IBu 0.90 4.68e-06 1.00e-04
Smp_050350.3 SmLINC04085-IBu 0.91 1.26e-06 6.29e-05
Smp_051210.3 SmLINC04085-IBu 0.94 1.80e-07 1.62e-05
Smp_052280.2 SmLINC04085-IBu 0.92 5.55e-07 3.53e-05
Smp_055340.2 SmLINC04085-IBu 0.91 1.34e-06 6.56e-05
Smp_056460.1 SmLINC04085-IBu 0.93 3.05e-07 2.33e-05
Smp_058660.1 SmLINC04085-IBu 0.94 1.37e-07 1.34e-05
Smp_079420.1 SmLINC04085-IBu 0.93 2.54e-07 2.05e-05
Smp_094050.1 SmLINC04085-IBu 0.90 2.81e-06 1.00e-04
Smp_095410.1 SmLINC04085-IBu 0.90 3.60e-06 1.00e-04
Smp_123550.1 SmLINC04085-IBu 0.90 3.53e-06 1.00e-04
Smp_137000.2 SmLINC04085-IBu 0.92 5.22e-07 3.38e-05
Smp_137320.1 SmLINC04085-IBu 0.91 1.20e-06 6.08e-05
Smp_141680.1 SmLINC04085-IBu 0.92 1.07e-06 5.59e-05
Smp_145400.1 SmLINC04085-IBu 0.95 1.86e-08 3.46e-06
Smp_151120.1 SmLINC04085-IBu 0.94 1.27e-07 1.28e-05
Smp_156930.1 SmLINC04085-IBu 0.92 7.10e-07 4.19e-05
Smp_169670.1 SmLINC04085-IBu 0.91 2.17e-06 9.21e-05
Smp_172480.1 SmLINC04085-IBu 0.94 1.50e-07 1.42e-05
Smp_172960.1 SmLINC04085-IBu 0.96 7.97e-09 1.96e-06
Smp_192780.1 SmLINC04085-IBu 0.90 3.82e-06 1.00e-04
Smp_194860.1 SmLINC04085-IBu 0.96 1.44e-08 2.92e-06
Smp_203090.1 SmLINC04085-IBu 0.94 8.56e-08 9.73e-06
Smp_205270.1 SmLINC04085-IBu 0.93 4.12e-07 2.87e-05