Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04077-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:7690021-7691046 - Strand: +


Fig. S5 for SmLINC04077-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC04077-IBu 0 1.23 3.96 -1.93 -1.93
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC04077-IBu 0.96 8.15e-09 1.99e-06
Smp_042090.3 SmLINC04077-IBu 0.99 2.44e-13 2.78e-09
Smp_062420.4 SmLINC04077-IBu 0.94 6.22e-08 7.83e-06
Smp_085110.3 SmLINC04077-IBu 0.97 5.06e-10 3.29e-07
Smp_098890.1 SmLINC04077-IBu 0.91 2.03e-06 8.79e-05
Smp_138080.1 SmLINC04077-IBu 0.90 3.19e-06 1.00e-04