Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04074-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:7643049-7643926 - Strand: +


Fig. 7A S3 for SmLINC04074-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_012010.1 SmLINC04074-IBu 0.85 4.12e-05 5.00e-04
Smp_202990.1 SmLINC04074-IBu 0.79 3.00e-04 3.00e-03
Fig. 6A for SmLINC04074-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_194140.1 0 0.06 0.11 -9.88 -9.88
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_202340.1 0 0.90 1.72 -6.17 -6.91
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_034980.1 0 0.00 -0.47 -4.42 -5.42
Smp_148570.1 0 2.59 1.60 -3.08 -5.21
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_203990.1 0 0.81 0.18 -4.26 -4.99
Smp_092780.1 0 -0.13 -0.30 -4.81 -4.98
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_087070.1 0 2.08 2.60 -2.67 -4.80
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_027010.1 0 1.13 0.23 -1.74 -4.63
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_031770.7 0 0.70 0.33 -3.21 -4.54
Smp_034840.2 0 -0.14 -0.56 -4.27 -4.43
Smp_099810.1 0 -0.11 -0.66 -4.18 -4.40
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36
Smp_058170.1 0 -0.02 0.05 -6.42 -4.35
Smp_160000.1 0 0.21 0.15 -4.03 -4.29
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_075640.2 0 2.99 2.20 -1.24 -3.44
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_077860.1 0 1.35 0.90 -2.31 -3.33
Smp_045950.1 0 0.07 -1.04 -4.82 -3.27
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_205840.1 0 0.97 0.46 -4.31 -2.31
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_020220.2 0 3.03 2.60 0.67 -1.87
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_146710.1 0 2.31 2.58 -1.48 -1.30
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_024360.2 0 3.66 2.97 0.48 -1.11
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_098590.1 0 -3.17 -4.90 -0.94 -0.48
Smp_200460.1 0 -3.99 -5.18 -0.77 -0.23
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_039640.1 0 9.69 9.38 7.53 8.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005080.1 SmLINC04074-IBu 0.83 9.10e-05 1.30e-03
Smp_012010.1 SmLINC04074-IBu 0.85 4.12e-05 7.00e-04
Smp_017080.1 SmLINC04074-IBu 0.86 2.61e-05 5.00e-04
Smp_018590.1 SmLINC04074-IBu 0.81 1.00e-04 2.20e-03
Smp_020220.2 SmLINC04074-IBu 0.91 1.69e-06 7.46e-05
Smp_022320.1 SmLINC04074-IBu 0.87 2.22e-05 4.00e-04
Smp_024360.2 SmLINC04074-IBu 0.83 1.00e-04 1.40e-03
Smp_027010.1 SmLINC04074-IBu 0.90 3.18e-06 1.00e-04
Smp_027990.1 SmLINC04074-IBu 0.81 2.00e-04 2.50e-03
Smp_031770.7 SmLINC04074-IBu 0.85 5.01e-05 8.00e-04
Smp_032280.1 SmLINC04074-IBu 0.93 3.45e-07 2.42e-05
Smp_034840.2 SmLINC04074-IBu 0.85 5.40e-05 9.00e-04
Smp_034980.1 SmLINC04074-IBu 0.81 2.00e-04 2.30e-03
Smp_035020.1 SmLINC04074-IBu 0.81 1.00e-04 2.30e-03
Smp_037610.1 SmLINC04074-IBu 0.87 1.59e-05 3.00e-04
Smp_038980.2 SmLINC04074-IBu 0.80 3.00e-04 3.30e-03
Smp_039640.1 SmLINC04074-IBu 0.90 4.75e-06 1.00e-04
Smp_045950.1 SmLINC04074-IBu 0.84 8.00e-05 1.20e-03
Smp_052290.1 SmLINC04074-IBu 0.80 2.00e-04 3.10e-03
Smp_054750.1 SmLINC04074-IBu 0.84 6.12e-05 9.00e-04
Smp_058170.1 SmLINC04074-IBu 0.82 1.00e-04 2.10e-03
Smp_059210.7 SmLINC04074-IBu 0.85 4.14e-05 7.00e-04
Smp_059340.3 SmLINC04074-IBu 0.85 4.81e-05 8.00e-04
Smp_059530.1 SmLINC04074-IBu 0.84 8.70e-05 1.20e-03
Smp_068270.3 SmLINC04074-IBu 0.93 4.32e-07 2.84e-05
Smp_075640.2 SmLINC04074-IBu 0.88 1.13e-05 2.00e-04
Smp_077860.1 SmLINC04074-IBu 0.96 3.02e-09 9.68e-07
Smp_079260.1 SmLINC04074-IBu 0.85 5.82e-05 9.00e-04
Smp_079280.1 SmLINC04074-IBu 0.89 6.53e-06 1.00e-04
Smp_084210.1 SmLINC04074-IBu 0.89 8.74e-06 2.00e-04
Smp_087070.1 SmLINC04074-IBu 0.83 9.63e-05 1.30e-03
Smp_090930.5 SmLINC04074-IBu 0.80 2.00e-04 2.80e-03
Smp_092780.1 SmLINC04074-IBu 0.84 8.32e-05 1.20e-03
Smp_093740.2 SmLINC04074-IBu 0.88 1.05e-05 2.00e-04
Smp_098590.1 SmLINC04074-IBu -0.83 1.00e-04 1.40e-03
Smp_099560.1 SmLINC04074-IBu 0.83 9.89e-05 1.40e-03
Smp_099810.1 SmLINC04074-IBu 0.81 2.00e-04 2.40e-03
Smp_123000.2 SmLINC04074-IBu 0.89 5.54e-06 1.00e-04
Smp_123870.1 SmLINC04074-IBu 0.80 3.00e-04 3.30e-03
Smp_126560.1 SmLINC04074-IBu 0.86 3.61e-05 6.00e-04
Smp_129780.1 SmLINC04074-IBu 0.89 7.99e-06 2.00e-04
Smp_136840.1 SmLINC04074-IBu 0.92 6.10e-07 3.62e-05
Smp_138140.1 SmLINC04074-IBu 0.80 3.00e-04 3.20e-03
Smp_138890.1 SmLINC04074-IBu 0.93 2.76e-07 2.07e-05
Smp_139980.1 SmLINC04074-IBu 0.93 5.00e-07 3.14e-05
Smp_140130.1 SmLINC04074-IBu 0.80 2.00e-04 2.90e-03
Smp_142460.1 SmLINC04074-IBu 0.91 1.20e-06 5.85e-05
Smp_142980.1 SmLINC04074-IBu 0.91 1.95e-06 8.25e-05
Smp_143180.1 SmLINC04074-IBu 0.81 2.00e-04 2.50e-03
Smp_146710.1 SmLINC04074-IBu 0.84 6.44e-05 1.00e-03
Smp_148570.1 SmLINC04074-IBu 0.94 1.57e-07 1.40e-05
Smp_149220.1 SmLINC04074-IBu 0.80 2.00e-04 3.00e-03
Smp_151220.1 SmLINC04074-IBu 0.91 2.33e-06 9.36e-05
Smp_152170.1 SmLINC04074-IBu 0.87 2.11e-05 4.00e-04
Smp_155690.1 SmLINC04074-IBu 0.84 7.45e-05 1.10e-03
Smp_157270.1 SmLINC04074-IBu 0.84 7.82e-05 1.10e-03
Smp_157750.1 SmLINC04074-IBu 0.85 4.63e-05 8.00e-04
Smp_157840.1 SmLINC04074-IBu 0.81 2.00e-04 2.40e-03
Smp_158680.1 SmLINC04074-IBu 0.82 1.00e-04 1.70e-03
Smp_159350.1 SmLINC04074-IBu 0.80 3.00e-04 3.10e-03
Smp_159380.1 SmLINC04074-IBu 0.81 2.00e-04 2.40e-03
Smp_160000.1 SmLINC04074-IBu 0.86 2.86e-05 5.00e-04
Smp_160670.1 SmLINC04074-IBu 0.81 2.00e-04 2.50e-03
Smp_161230.1 SmLINC04074-IBu 0.86 2.99e-05 5.00e-04
Smp_161270.1 SmLINC04074-IBu 0.89 7.63e-06 2.00e-04
Smp_161280.1 SmLINC04074-IBu 0.88 9.92e-06 2.00e-04
Smp_164180.1 SmLINC04074-IBu 0.81 2.00e-04 2.50e-03
Smp_164270.1 SmLINC04074-IBu 0.91 2.32e-06 9.34e-05
Smp_168800.1 SmLINC04074-IBu 0.87 1.66e-05 3.00e-04
Smp_169500.1 SmLINC04074-IBu 0.86 2.72e-05 5.00e-04
Smp_176230.2 SmLINC04074-IBu 0.82 1.00e-04 1.90e-03
Smp_179670.1 SmLINC04074-IBu 0.85 5.51e-05 9.00e-04
Smp_189180.2 SmLINC04074-IBu 0.83 9.88e-05 1.40e-03
Smp_190900.1 SmLINC04074-IBu 0.80 3.00e-04 3.40e-03
Smp_193650.1 SmLINC04074-IBu 0.83 1.00e-04 1.50e-03
Smp_193700.1 SmLINC04074-IBu 0.83 1.00e-04 1.50e-03
Smp_193990.1 SmLINC04074-IBu 0.87 1.92e-05 4.00e-04
Smp_194110.1 SmLINC04074-IBu 0.84 6.60e-05 1.00e-03
Smp_194140.1 SmLINC04074-IBu 0.86 3.21e-05 6.00e-04
Smp_194150.1 SmLINC04074-IBu 0.86 3.37e-05 6.00e-04
Smp_194670.1 SmLINC04074-IBu 0.85 4.68e-05 8.00e-04
Smp_196410.1 SmLINC04074-IBu 0.82 1.00e-04 1.90e-03
Smp_200460.1 SmLINC04074-IBu -0.82 1.00e-04 2.00e-03
Smp_200600.1 SmLINC04074-IBu 0.95 4.62e-08 6.04e-06
Smp_201230.1 SmLINC04074-IBu 0.89 7.61e-06 2.00e-04
Smp_202340.1 SmLINC04074-IBu 0.85 5.09e-05 8.00e-04
Smp_203990.1 SmLINC04074-IBu 0.82 1.00e-04 1.90e-03
Smp_204820.1 SmLINC04074-IBu 0.90 3.66e-06 1.00e-04
Smp_204830.1 SmLINC04074-IBu 0.97 8.28e-10 4.17e-07
Smp_205220.1 SmLINC04074-IBu 0.84 8.87e-05 1.20e-03
Smp_205840.1 SmLINC04074-IBu 0.83 1.00e-04 1.50e-03
Smp_212350.1 SmLINC04074-IBu 0.86 3.65e-05 6.00e-04