Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04065-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:7173457-7176926 - Strand: -


Fig. S5 for SmLINC04065-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
SmLINC04065-IBu 0 1.68 2.43 -5.86 -2.73
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_103540.1 0 11.43 12.63 8.84 9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.3 SmLINC04065-IBu 0.93 4.94e-07 3.25e-05
Smp_062070.1 SmLINC04065-IBu 0.90 3.94e-06 1.00e-04
Smp_090930.5 SmLINC04065-IBu 0.90 2.63e-06 1.00e-04
Smp_103540.1 SmLINC04065-IBu 0.90 2.89e-06 1.00e-04
Smp_168800.1 SmLINC04065-IBu 0.91 2.11e-06 9.04e-05