Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04063-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:6846458-6852207 - Strand: -


Fig. S5 for SmLINC04063-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC04063-IBu 0 -0.15 -1.46 -3.86 -5.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC04063-IBu 0.93 2.48e-07 2.02e-05
Smp_036270.4 SmLINC04063-IBu 0.95 1.50e-08 2.99e-06
Smp_111640.1 SmLINC04063-IBu 0.92 5.73e-07 3.61e-05
Smp_125070.1 SmLINC04063-IBu 0.93 4.34e-07 2.97e-05
Smp_160230.1 SmLINC04063-IBu 0.92 9.51e-07 5.15e-05
Smp_184710.1 SmLINC04063-IBu 0.93 2.06e-07 1.78e-05
Smp_204360.1 SmLINC04063-IBu 0.93 4.49e-07 3.05e-05
Smp_205330.1 SmLINC04063-IBu 0.93 2.58e-07 2.08e-05
Smp_205450.1 SmLINC04063-IBu 0.91 2.46e-06 1.00e-04