Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04027-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:5117429-5120778 - Strand: -


Fig. S5 for SmLINC04027-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC04027-IBu 0 0.36 -1.40 -3.47 -5.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC04027-IBu 0.91 1.29e-06 6.39e-05
Smp_111640.1 SmLINC04027-IBu 0.94 7.66e-08 9.02e-06
Smp_125070.1 SmLINC04027-IBu 0.92 5.48e-07 3.50e-05
Smp_184710.1 SmLINC04027-IBu 0.97 6.60e-10 3.90e-07
Smp_185170.1 SmLINC04027-IBu 0.90 4.17e-06 1.00e-04
Smp_185830.1 SmLINC04027-IBu 0.91 2.21e-06 9.34e-05
Smp_204360.1 SmLINC04027-IBu 0.94 1.52e-07 1.44e-05
Smp_205450.1 SmLINC04027-IBu 0.90 3.15e-06 1.00e-04