Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04018-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:4561272-4563577 - Strand: +


Fig. S5 for SmLINC04018-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04018-IBu 0 1.12 0.70 4.37 4.21
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_083990.2 0 9.99 8.37 12.41 12.60

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC04018-IBu 0.97 1.29e-09 6.02e-07
Smp_031040.1 SmLINC04018-IBu 0.92 9.69e-07 5.22e-05
Smp_034980.2 SmLINC04018-IBu 0.94 8.43e-08 9.63e-06
Smp_045200.1 SmLINC04018-IBu 0.91 2.28e-06 9.55e-05
Smp_055340.2 SmLINC04018-IBu 0.91 1.21e-06 6.13e-05
Smp_058660.1 SmLINC04018-IBu 0.90 4.11e-06 1.00e-04
Smp_068270.1 SmLINC04018-IBu 0.92 5.99e-07 3.72e-05
Smp_083990.2 SmLINC04018-IBu 0.91 1.25e-06 6.25e-05
Smp_125200.1 SmLINC04018-IBu 0.91 2.48e-06 1.00e-04
Smp_125210.1 SmLINC04018-IBu 0.91 1.30e-06 6.45e-05
Smp_145400.1 SmLINC04018-IBu 0.92 1.07e-06 5.60e-05
Smp_150980.2 SmLINC04018-IBu 0.93 2.33e-07 1.93e-05
Smp_154190.1 SmLINC04018-IBu 0.90 4.13e-06 1.00e-04
Smp_160090.2 SmLINC04018-IBu 0.90 3.13e-06 1.00e-04
Smp_164550.1 SmLINC04018-IBu 0.93 4.44e-07 3.02e-05
Smp_170280.1 SmLINC04018-IBu 0.92 8.76e-07 4.86e-05
Smp_172480.1 SmLINC04018-IBu 0.92 8.01e-07 4.56e-05
Smp_205270.1 SmLINC04018-IBu 0.91 1.82e-06 8.16e-05