Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04003-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:4431738-4440840 - Strand: +


Fig. S5 for SmLINC04003-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
SmLINC04003-IBu 0 -0.16 1.42 -3.63 -8.87
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC04003-IBu 0.91 1.78e-06 8.03e-05
Smp_032120.1 SmLINC04003-IBu 0.90 3.06e-06 1.00e-04
Smp_036270.3 SmLINC04003-IBu 0.92 7.09e-07 4.19e-05
Smp_159070.3 SmLINC04003-IBu 0.95 3.43e-08 5.23e-06
Smp_194060.1 SmLINC04003-IBu 0.91 2.34e-06 9.73e-05
Smp_200120.1 SmLINC04003-IBu 0.92 6.87e-07 4.10e-05