Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03980-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:3083609-3090828 - Strand: +


Fig. S5 for SmLINC03980-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
SmLINC03980-IBu 0 0.74 -9.43 -9.40 -9.93
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC03980-IBu 0.96 4.10e-09 1.27e-06
Smp_036270.4 SmLINC03980-IBu 0.91 2.10e-06 9.02e-05
Smp_111640.1 SmLINC03980-IBu 0.94 1.86e-07 1.65e-05
Smp_112090.1 SmLINC03980-IBu 0.97 1.83e-10 1.71e-07
Smp_125070.1 SmLINC03980-IBu 0.91 1.69e-06 7.72e-05
Smp_182090.1 SmLINC03980-IBu 0.90 2.87e-06 1.00e-04
Smp_184710.1 SmLINC03980-IBu 0.90 3.19e-06 1.00e-04
Smp_185680.1 SmLINC03980-IBu 0.92 8.09e-07 4.60e-05
Smp_185830.1 SmLINC03980-IBu 0.94 7.20e-08 8.65e-06
Smp_204360.1 SmLINC03980-IBu 0.91 1.37e-06 6.67e-05
Smp_205450.1 SmLINC03980-IBu 0.90 2.51e-06 1.00e-04