Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03956-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:1147956-1148924 - Strand: +


Fig. S5 for SmLINC03956-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03956-IBu 0 1.73 1.73 5.08 6.37
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_083430.1 0 4.18 6.49 11.73 13.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083430.1 SmLINC03956-IBu 0.90 2.92e-06 1.00e-04
Smp_095410.1 SmLINC03956-IBu 0.94 1.47e-07 1.41e-05
Smp_192780.1 SmLINC03956-IBu 0.91 1.20e-06 6.08e-05
Smp_196830.1 SmLINC03956-IBu 0.91 1.39e-06 6.75e-05