Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03953-IBu Data

Chromosome: Chr 6 - Coordinate: Chr 6:1116544-1138174 - Strand: -


Fig. S5 for SmLINC03953-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_100130.2 0 8.47 10.05 8.41 9.81
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC03953-IBu 0.96 6.15e-09 1.65e-06
Smp_021340.3 SmLINC03953-IBu 0.96 7.06e-09 1.81e-06
Smp_032120.1 SmLINC03953-IBu 0.95 3.37e-08 5.17e-06
Smp_034840.1 SmLINC03953-IBu 0.93 3.62e-07 2.62e-05
Smp_036270.3 SmLINC03953-IBu 0.90 2.76e-06 1.00e-04
Smp_059340.3 SmLINC03953-IBu 0.95 4.60e-08 6.38e-06
Smp_059530.1 SmLINC03953-IBu 0.94 1.30e-07 1.30e-05
Smp_062070.1 SmLINC03953-IBu 0.96 7.59e-09 1.90e-06
Smp_062610.2 SmLINC03953-IBu 0.91 2.07e-06 8.93e-05
Smp_083380.2 SmLINC03953-IBu 0.95 2.64e-08 4.38e-06
Smp_084940.2 SmLINC03953-IBu 0.98 5.87e-11 8.33e-08
Smp_098370.1 SmLINC03953-IBu 0.97 1.06e-09 5.31e-07
Smp_099160.4 SmLINC03953-IBu 0.93 4.04e-07 2.83e-05
Smp_100130.2 SmLINC03953-IBu 0.91 2.20e-06 9.32e-05
Smp_103540.1 SmLINC03953-IBu 0.97 9.58e-10 4.96e-07
Smp_141630.4 SmLINC03953-IBu 0.91 1.52e-06 7.17e-05
Smp_159070.3 SmLINC03953-IBu 0.93 3.70e-07 2.66e-05
Smp_159150.1 SmLINC03953-IBu 0.93 2.36e-07 1.95e-05